CATH Domain: 1ckmA01 XML data for domain: 1ckmA01

Molscript image for 1ckmA01
1ckmA01
PDB coordinates for domain 1ckmA01

PDB 1ckm, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.470 D-amino Acid Aminotransferase; Chain A, domain 1
3.30.470.30 DNA ligase/mRNA capping enzyme Gene3D
3.30.470.30.6
3.30.470.30.6.1
3.30.470.30.6.1.1
3.30.470.30.6.1.1.1
3.30.470.30.6.1.1.1.1

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Segment boundaries for domain 1ckmA01

Chopping figure for domain 1ckmA01
DomainStart PDB ResidueStop PDB Residue
1ckmA01 11 59
1ckmA01 84 189
1ckmA02 236 318
1ckmA03 190 235
1ckmA03 319 326

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.30.470.30.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1x9nA03 77.67 DNA replicationNucleotide excision repairDNA ligase 1Base excision repairDNA binding 3.30.470.30 126 12 60 2.86 4.72
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ckmA01
NITTERAVLTLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPDGIRFMMFFTRVFGFKVCTIIDRAMTVYLLP
FKNIPRVLFQGSIFDGELCVDIVEKKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILRYKE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ckmA01
MVPPTINTGKNITTERAVLTLNGLQIKLHKVVGESRDDIVAKMKDLAMDDHKFPRLPGPDGIRFMMFFTRVFGFKVCTII
DRAMTVYLLPFKNIPRVLFQGSIFDGELCVDIVEKKFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAI
LRYKE
BLAST against CATH

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Domain History Events (3)

Classification merge by cuff on 16 Jun 2009 15:42

COMMENT: merge 3.90.63.10 -> 3.30.470.30 FINAL: merge superfamilies - evidence from scop

Insertion by lewis on 18 Jan 2007 19:01

Rechopping chains just before release v3.1.0 in order to fix missing fragments.

Domain assigned by lewis on 18 Jan 2007 19:01

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.