CATH Domain: 1ciyA02 XML data for domain: 1ciyA02

Molscript image for 1ciyA02
1ciyA02
PDB coordinates for domain 1ciyA02

PDB 1ciy, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.100 Aligned Prism
2.100.10 Vitelline Membrane Outer Layer Protein I, subunit A
2.100.10.10 Gene3D
2.100.10.10.2
2.100.10.10.2.1
2.100.10.10.2.1.1
2.100.10.10.2.1.1.1
2.100.10.10.2.1.1.1.1

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Segment boundaries for domain 1ciyA02

Chopping figure for domain 1ciyA02
DomainStart PDB ResidueStop PDB Residue
1ciyA01 33 253
1ciyA02 266 461
1ciyA03 254 265
1ciyA03 462 608

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.100.10.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3eb7A03 86.18 Bacillus thuringiensisCry8Ea1 2.100.10.10 197 24 89 2.44 2.73
1ji6A03 85.81 Bacillus thuringiensisPesticidal crystal protein cry3Bb 2.100.10.10 199 23 91 2.51 2.74
1c3kA00 75.97 Helianthus tuberosusLectin 1 2.100.10.30 143 9 69 3.32 4.78
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ciyA02
EIYTNPVLENFDGSFRGMAQRIEQNIRQPHLMDILNSITIYTDVHRGFNYWSGHQITASPVGFSGPEFAFPLFGNAGNAA
PPVLVSLTGLGIFRTLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSLDVIPPQDNSVPPRA
GFSHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ciyA02
EIYTNPVLENFDGSFRGMAQRIEQNIRQPHLMDILNSITIYTDVHRGFNYWSGHQITASPVGFSGPEFAFPLFGNAGNAA
PPVLVSLTGLGIFRTLSSPLYRRIILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSLDVIPPQDNSVPPRA
GFSHRLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEF
BLAST against CATH

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Domain History Events (3)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1ciy002" to "1ciyA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Insertion by lewis on 18 Jan 2007 19:00

Rechopping chains just before release v3.1.0 in order to fix missing fragments.

Domain assigned by lewis on 18 Jan 2007 19:00

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.