CATH Domain: 1ci6B00 XML data for domain: 1ci6B00

Molscript image for 1ci6B00
1ci6B00
PDB coordinates for domain 1ci6B00

PDB 1ci6, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.14
1.20.5.170.14.1
1.20.5.170.14.1.1
1.20.5.170.14.1.1.1
1.20.5.170.14.1.1.1.1

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Segment boundaries for domain 1ci6B00

Chopping figure for domain 1ci6B00
DomainStart PDB ResidueStop PDB Residue
1ci6B00 239 285

Structural Neighbourhood (80 entries)

There are 80 matching structural neighberhood comparisons for CATH ID 1.20.5.170.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 80 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2p7jB01 89.75 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 10 76 0.64 0.84
3kpeA00 88.96 Fusion glycoprotein F0Human respiratory syncytial virus A2 1.20.5.300 47 12 91 2.57 2.81
1junA00 88.88 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 20 91 1.45 1.58
1n2dC00 87.93 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 4 79 1.63 2.06
1ezjA02 87.29 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 12 90 2.23 2.47
3effK02 87.15 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 6 89 2.46 2.75
1ybkA00 85.93 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 4 84 2.91 3.44
1kilE00 85.80 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 12 87 2.87 3.29
1jcdB00 85.71 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 6 71 1.15 1.62
1r8eA03 85.48 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 13 70 1.20 1.71
1gmjD00 85.48 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 6 83 2.62 3.12
1uixA00 85.44 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 8 69 0.96 1.39
1jocA01 85.29 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 23 70 1.29 1.84
1nkzB00 85.22 Rhodoblastus acidophilusLight-harvesting protein B-800/850 beta chain 1.20.5.250 41 2 80 2.90 3.59
1a2xB00 85.22 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 0 65 0.95 1.44
1svfC00 84.71 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 6 75 2.60 3.43
2basA02 84.48 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 6 70 1.85 2.63
1pp9E01 84.34 Cytochrome b-c1 complex subunit Rieske, mitochondrialBos taurus 1.20.5.270 64 6 68 2.30 3.35
1ik7A00 84.34 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 4 78 2.35 2.98
1piqA00 84.20 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 12 59 0.84 1.41
1kv4A00 83.53 Moricin-1Bombyx mori 1.20.5.750 42 2 80 3.03 3.75
2k1aA00 83.14 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 2 89 4.04 4.52
2ifoA00 83.08 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 0 76 2.22 2.90
1pfiA00 83.03 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 2 89 3.42 3.83
1jekA00 82.88 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 10 63 1.29 2.02
1ic2B00 82.75 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 19 59 1.23 2.06
2zjsE00 82.64 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 13 95 4.56 4.76
1hf9A00 82.63 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 2 85 3.42 4.02
1m7lA00 82.53 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 7 85 3.75 4.41
1vf5C03 82.10 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 9 68 1.67 2.45
1no4C00 82.00 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 6 64 2.81 4.36
2b9bA04 81.86 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 4 74 3.69 4.97
2qjyC01 81.64 Oxidative phosphorylationMetabolic pathwaysRhodobacter sphaeroidesUbiquinol-cytochrome c reductase iron-sulfur subunitUbiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] 1.20.5.510 33 9 70 3.01 4.29
3b8eB00 81.37 Sodium/potassium-transporting ATPase subunit beta-1Sus scrofa 1.20.5.170 46 2 72 2.58 3.57
1fjkA00 81.31 Calcium signaling pathwayDilated cardiomyopathySus scrofaCardiac phospholambanPhospholamban 1.20.5.290 52 4 71 2.48 3.49
1wt6B00 80.94 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 8 70 3.06 4.36
3ii6A02 80.73 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 6 77 3.28 4.23
2hr3A01 80.69 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 55 2.23 4.03
3gwoA00 80.39 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 6 62 2.00 3.21
2w83C00 80.14 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 10 68 3.41 4.97
1omiA02 79.89 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 11 57 1.26 2.19
1fdoA05 79.63 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 11 55 1.50 2.71
1nwqA00 79.57 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 4 60 1.33 2.22
1ik9B02 79.40 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 14 51 1.27 2.45
1owaA01 79.35 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 12 61 2.09 3.39
1l2pA00 79.35 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 4 44 0.53 1.20
1u57A00 78.83 Human immunodeficiency virus type 1 lw12.3 isolateGag polyprotein 1.20.5.760 48 10 66 2.34 3.51
1nknA00 78.58 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 0 63 3.04 4.79
2r44A01 78.50 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 11 55 1.05 1.90
1kmiZ01 78.39 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.20.5.590 30 10 44 0.46 1.03
1fd9A02 78.24 FKBP-type peptidyl-prolyl cis-trans isomerase FklB [EC:5.2.1.8]Outer membrane protein MIPLegionella pneumophila subsp. pneumophila str. Philadelphia 1 1.10.287.460 98 10 47 1.53 3.19
1mg1A03 78.17 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 17 55 1.96 3.50
1pl5A00 77.84 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 12 54 2.10 3.84
3fx7A00 77.56 Helicobacter pyloriPutative uncharacterized protein 1.10.287.850 83 6 50 1.29 2.55
1d7mA00 77.34 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 17 46 1.32 2.84
2p10B02 77.28 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 19 51 1.20 2.35
1dh3A00 77.21 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 4 52 1.22 2.31
1jmmA01 77.18 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 0 57 1.64 2.85
2oarE02 77.06 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 4 46 1.48 3.16
1l8dA00 76.87 Exonuclease SbcCPyrococcus furiosusDNA double-strand break repair rad50 ATPase 1.10.287.510 103 8 42 0.91 2.13
1be3K00 76.63 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 0 46 0.91 1.94
1s3jB01 75.84 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.20.5.420 30 6 57 2.51 4.37
1go9A00 75.81 1.20.5.480 39 7 70 3.41 4.86
1k04A01 75.43 Focal adhesion kinase 1Focal adhesionIntegrin-mediated signaling pathwayCytoskeletonHomo sapiens 1.20.5.540 38 0 42 1.41 3.31
1ow6A01 75.32 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 0 42 1.97 4.63
1nafA01 75.01 ADP-ribosylation factor-binding protein GGA1Homo sapiensProtein bindingIntracellular protein transport 1.20.5.170 36 2 42 0.83 1.95
1h8bB00 74.79 TitinOryctolagus cuniculus 1.20.5.510 23 8 48 2.19 4.48
2o01J01 74.72 Photosystem I reaction center subunit IXSpinacia oleracea 1.20.5.510 25 8 53 2.46 4.62
1ozhA03 74.64 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 12 48 1.77 3.62
1favA00 74.64 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 4 43 1.71 3.92
2oarA02 72.21 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 17 11 36 0.54 1.49
3c8vA04 71.06 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 40 1.17 2.89
1kmiZ02 70.01 Bacterial chemotaxisChemotaxis protein cheZProtein bindingChemotaxis protein CheZEscherichia coli K-12 1.10.287.500 134 6 35 1.65 4.70
1qexA01 69.68 Enterobacteria phage T4Baseplate structural protein Gp9 1.20.5.960 35 0 42 2.08 4.89
1mslA02 69.34 1.20.5.220 18 5 38 1.35 3.52
1d66B02 68.70 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 31 0.32 1.00
1m8oB00 68.69 Positive regulation of endothelial cell migrationPlatelet-derived growth factor receptor bindingPositive regulation of endothelial cell proliferationActivation of protein kinase activityRegulation of bone resorption 1.20.5.630 47 2 46 2.19 4.68
1f8vD00 66.32 Pariacato virusProtein alpha 1.20.5.280 25 4 34 1.00 2.94
1mkmA02 66.25 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 29 0.55 1.85
2r05A03 64.34 Homo sapiensProgrammed cell death 6-interacting proteinCalcium-dependent protein binding 1.20.140.50 189 12 24 1.06 4.26
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Displaying entries 1 to 80 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ci6B00
SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ci6B00
SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"