CATH Domain: 1ci6A00 XML data for domain: 1ci6A00

Molscript image for 1ci6A00
1ci6A00
PDB coordinates for domain 1ci6A00

PDB 1ci6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.170 Gene3D
1.20.5.170.13
1.20.5.170.13.1
1.20.5.170.13.1.1
1.20.5.170.13.1.1.1
1.20.5.170.13.1.1.1.1

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Segment boundaries for domain 1ci6A00

Chopping figure for domain 1ci6A00
DomainStart PDB ResidueStop PDB Residue
1ci6A00 286 341

Structural Neighbourhood (84 entries)

There are 84 matching structural neighberhood comparisons for CATH ID 1.20.5.170.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 84 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gmjD00 91.60 Negative regulation of hydrolase activityProtein homodimerization activityATPase inhibitor activityBos taurusCalmodulin binding 1.20.5.500 56 17 98 1.82 1.85
1svfC00 90.12 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.300 62 7 85 1.54 1.80
3gwoA00 89.81 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 53 9 87 1.21 1.38
1ezjA02 89.72 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 15 92 2.27 2.44
3e7kA00 89.29 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 1 92 2.01 2.16
2b9bA04 89.14 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 5 90 2.35 2.60
1nwqA00 88.85 Protein domain specific bindingRattus norvegicusAcute-phase responsePathways in cancerOrgan regeneration 1.20.5.170 60 7 81 1.14 1.40
1jcdB00 88.60 Peptidoglycan bindingMurein lipoproteinMajor outer membrane lipoprotein LppProtein bindingEscherichia coli K-12 1.20.5.190 52 11 92 2.57 2.77
1l2pA00 88.55 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportAnchored to membraneF-type H+-transporting ATPase subunit b [EC:3.6.3.14] 1.20.5.620 61 5 75 0.71 0.94
1ik7A00 88.49 Regulation of proteolysisProtein domain specific bindingHemocyte proliferationPlasma membraneZygotic specification of dorsal/ventral axis 1.20.5.530 52 9 80 1.27 1.58
1ybkA00 88.14 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 1 71 2.32 3.25
1jekA00 86.98 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 15 67 0.88 1.30
1ic2B00 86.75 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 12 72 1.10 1.51
2p7jB01 86.01 Vibrio parahaemolyticusPutative sensory box/GGDEF family protein 1.20.5.170 39 12 69 1.29 1.85
1g2cB00 85.58 Human respiratory syncytial virus strain RSS-2Fusion glycoprotein F0 1.20.5.170 40 15 71 2.65 3.71
3cx5E01 85.42 Cytochrome b-c1 complex subunit Rieske, mitochondrialMitochondrial respiratory chain complex IIIOxidative phosphorylationMetabolic pathwaysAerobic respiration 1.20.5.270 55 5 71 1.82 2.55
1gk4C00 85.33 Cellular component movementProtein C-terminus bindingIntermediate filamentVimentinCytosol 1.20.5.170 70 5 74 2.45 3.30
1wt6B00 84.68 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 7 71 1.79 2.50
1junA00 84.58 Pathways in cancerChagas diseaseNeurotrophin signaling pathwayB cell receptor signaling pathwayT cell receptor signaling pathway 1.20.5.170 43 11 69 1.18 1.69
2ifoA00 84.53 Xanthomonas phage XfCapsid protein G8P 1.20.5.230 46 2 76 1.87 2.44
1ci6B00 84.36 Mammary gland epithelial cell differentiationMammary gland epithelial cell proliferationCytoplasmProtein heterodimerization activitySequence-specific enhancer binding RNA polymerase II transcription factor activity 1.20.5.170 47 10 67 1.74 2.56
1nknA00 84.35 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 8 75 2.38 3.15
1pl5A00 84.13 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 10 74 1.71 2.29
1ifpA00 83.92 Pseudomonas phage Pf3Capsid protein G8P 1.20.5.440 44 11 76 2.18 2.84
2w83C00 83.87 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 19 68 1.91 2.78
1kilE00 83.44 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 14 62 1.94 3.10
3efgA00 82.77 Xanthomonas campestris pv. campestrisSlyX proteinProtein slyX homolog 1.20.5.300 49 4 57 0.75 1.31
1pfiA00 82.59 Pseudomonas phage Pf1Capsid protein G8P 1.20.5.230 46 10 82 3.07 3.74
1qgkB00 82.47 DNA metabolic processG2 phase of mitotic cell cycleNuclear localization sequence bindingRegulation of DNA recombinationImportin subunit alpha-2 1.20.5.690 44 4 58 2.83 4.80
1mg1A03 82.07 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinEscherichia coli O157:H7Maltose-binding periplasmic protein 1.10.287.210 84 10 60 1.89 3.11
1s5lX00 81.87 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 7 69 2.67 3.83
1no4C00 81.82 Bacillus phage phi29Head morphogenesis protein 1.20.5.400 73 5 58 1.51 2.56
2zjsE00 81.60 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 6 66 2.07 3.13
2zxeB01 81.28 1.20.5.170 35 0 51 0.50 0.97
1kv4A00 81.01 Moricin-1Bombyx mori 1.20.5.750 42 11 75 2.67 3.56
1uixA00 80.99 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 10 52 1.26 2.38
1hf9A00 80.99 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 4 60 1.23 2.03
1dh3A00 80.46 Positive regulation of multicellular organism growthLactationRegulation of cell sizeAxonogenesisMus musculus 1.20.5.170 55 9 64 1.51 2.35
1piqA00 80.38 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Specific RNA polymerase II transcription factor activity 1.20.5.170 31 9 51 0.84 1.62
1xrdA01 80.11 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 11 76 3.38 4.40
1nkzB00 79.87 Rhodoblastus acidophilusLight-harvesting protein B-800/850 beta chain 1.20.5.250 41 2 58 2.87 4.87
1owaA01 79.76 Structural constituent of cytoskeletonSpectrinHomo sapiensSpectrin-associated cytoskeletonActin filament organization 1.20.5.170 32 12 57 2.12 3.71
1ik9B02 79.73 DNA ligation involved in DNA repairResponse to X-rayDNA-dependent protein kinase-DNA ligase 4 complexProtein C-terminus bindingDouble-strand break repair via nonhomologous end joining 1.20.5.370 83 7 51 0.95 1.83
2spcA00 79.69 Oocyte constructionSpectrosome organizationPlasma membrane organizationNegative regulation of microtubule depolymerizationGermarium-derived female germ-line cyst formation 1.20.58.60 107 8 52 1.68 3.21
1omiA02 79.50 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 7 48 0.73 1.51
1pp9E01 79.47 Cytochrome b-c1 complex subunit Rieske, mitochondrialBos taurus 1.20.5.270 64 1 56 1.67 2.97
2k1aA00 79.35 Integrin alpha 2BIdentical protein bindingPathways in cancerHematopoietic cell lineageDilated cardiomyopathy 1.20.5.930 42 4 58 2.42 4.11
1m7lA00 78.82 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 2 55 1.21 2.19
1vf5C03 78.65 Mastigocladus laminosusApocytochrome f 1.20.5.700 32 6 57 1.64 2.87
1go9A00 78.50 1.20.5.480 39 12 57 1.95 3.41
1jmmA01 78.42 Major cell-surface adhesin PAcStreptococcus mutans 1.20.5.250 32 9 51 1.17 2.26
2o1kA00 78.41 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 4 48 1.33 2.76
1jocA01 78.26 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 7 48 1.16 2.40
1d7mA00 78.23 Cortexillin-1Response to bacteriumProtein homodimerization activityActin filament bundle assemblyActin filament network formation 1.20.5.1050 101 10 55 2.36 4.26
3bz1H01 78.11 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II PsbH proteinPhotosystem II reaction center protein HMetabolic pathways 1.20.5.880 51 3 57 2.78 4.87
2basA02 77.97 Bacillus subtilisUncharacterized EAL-domain containing protein ykuI 1.20.5.170 46 10 51 1.59 3.07
1htmD00 77.90 HemagglutininInfluenza A virus (A/Aichi/2/1968(H3N2)) 3.90.20.10 123 7 45 0.63 1.38
1ltsC00 77.79 Heat-labile enterotoxin A chainEscherichia coli 1.20.5.240 41 4 48 0.98 2.03
1ytzT00 77.43 Troponin T, fast skeletal muscle isoformsGallus gallus 1.20.5.350 90 7 52 1.99 3.81
1tiiC00 77.43 Heat-labile enterotoxin IIB, A chainEscherichia coli 1.20.5.200 36 11 46 1.19 2.56
1n2dC00 77.32 Mating projection tipGolgi inheritanceActin filament bindingVesicle-mediated transportMyosin-2 1.20.5.190 48 8 42 0.47 1.10
1a2xB00 74.62 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 0 37 0.63 1.68
2oarE02 74.42 Large conductance mechanosensitive channel, MscL familyLarge-conductance mechanosensitive channelMycobacterium tuberculosis H37Ra 1.20.5.220 22 9 39 1.28 3.26
2p10B02 74.32 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 11 46 2.20 4.74
1be3K00 73.61 Cardiac muscle contractionCytochrome b-c1 complex subunit 10Oxidative phosphorylationParkinson's diseaseAlzheimer's disease 1.20.5.220 22 9 39 0.92 2.34
1favA00 73.60 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyEnvelope glycoprotein gp160General control protein GCN4General control protein GCN4 1.10.287.210 78 5 35 0.64 1.78
2r44A01 73.48 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 11 46 1.88 4.05
1vl2A03 73.47 Thermotoga maritimaArginine and proline metabolismArgininosuccinate synthase [EC:6.3.4.5]Alanine, aspartate and glutamate metabolismArgininosuccinate synthase 1.20.5.470 32 6 55 2.68 4.84
1h8bB00 73.44 TitinOryctolagus cuniculus 1.20.5.510 23 21 41 1.92 4.67
1mqsB00 72.56 Vesicle fusionSyntaxin 5SNAP receptor activityER to Golgi vesicle-mediated transportRetrograde vesicle-mediated transport, Golgi to ER 1.20.5.460 26 7 46 1.88 4.05
1bmfG00 72.38 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 122 12 43 2.07 4.76
1ozhA03 72.32 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 16 39 1.87 4.76
2p2uA01 71.95 Desulfovibrio vulgaris str. HildenboroughHost-nuclease inhibitor protein Gam, putative 1.20.5.170 69 10 43 2.13 4.90
2hr3A01 71.81 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 37 1.26 3.36
1nafA01 71.72 ADP-ribosylation factor-binding protein GGA1Homo sapiensProtein bindingIntracellular protein transport 1.20.5.170 36 5 39 1.04 2.65
2rh0A02 68.96 Mus musculusNudC domain-containing protein 2 1.20.5.740 29 3 33 1.61 4.75
1l8dA00 68.51 Exonuclease SbcCPyrococcus furiosusDNA double-strand break repair rad50 ATPase 1.10.287.510 103 5 28 0.83 2.95
1dd4D01 68.10 Thermotoga maritima50S ribosomal protein L7/L12 1.20.5.710 30 3 30 0.56 1.84
2i8dA02 68.04 Hypothetical proteinLactobacillus casei ATCC 334Putative uncharacterized protein 1.20.5.420 30 0 30 0.43 1.42
2qiwA02 67.28 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 11 32 0.86 2.68
1mslA02 65.79 1.20.5.220 18 5 32 1.38 4.29
1d66B02 64.98 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 26 26 0.40 1.49
3c8vA04 63.20 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 10 25 0.43 1.72
1mkmA02 61.30 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 0 25 0.57 2.28
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Displaying entries 1 to 84 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ci6A00
EQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ci6A00
MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEEV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"