CATH Domain: 1cf7A00 XML data for domain: 1cf7A00

Molscript image for 1cf7A00
1cf7A00
PDB coordinates for domain 1cf7A00

PDB 1cf7, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.141
1.10.10.10.141.1
1.10.10.10.141.1.1
1.10.10.10.141.1.1.1
1.10.10.10.141.1.1.1.1

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Segment boundaries for domain 1cf7A00

Chopping figure for domain 1cf7A00
DomainStart PDB ResidueStop PDB Residue
1cf7A00 16 82

Structural Neighbourhood (37 entries)

There are 37 matching structural neighberhood comparisons for CATH ID 1.10.10.10.141.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 37 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1dpuA00 86.27 DNA-dependent DNA replicationReplication protein A 32 kDa subunitNucleotide excision repairDNA replicationReplication factor A2 1.10.10.10 69 11 92 4.17 4.50
1ldjA06 85.39 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 68 5 82 1.92 2.33
1w1wE00 85.18 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 13 84 2.30 2.73
2jt1A00 84.85 PefI proteinSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 71 16 85 2.49 2.90
1oyiA00 84.51 Vaccinia virusDouble-stranded RNA-binding protein 1.10.10.10 62 6 88 2.48 2.82
2hr3D02 83.94 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 61 11 88 2.87 3.26
1u5tB02 82.63 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 69 11 86 3.00 3.45
1bbyA00 81.91 Basal transcription factorsGeneral transcription factor IIF subunit 2General RNA polymerase II transcription factor activityHomo sapiensTranscription initiation factor TFIIF beta subunit 1.10.10.10 69 11 82 2.65 3.21
1s6lA01 80.85 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 11 74 2.35 3.15
1b4aA01 80.41 Geobacillus stearothermophilusArginine repressor 1.10.10.10 59 6 71 3.04 4.24
1u8bA02 79.11 Regulatory protein adaZinc ion bindingAraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]Escherichia coli K-12 1.10.10.60 59 13 80 3.51 4.36
1ng6A02 79.10 Hypothetical proteinBacillus subtilisUncharacterized protein yqeY 1.10.10.410 57 8 74 3.23 4.33
1t56A01 78.99 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHRMycobacterium tuberculosis 1.10.10.60 46 4 62 2.57 4.10
2hyjA01 78.86 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 10 62 2.35 3.75
1q1vA00 78.61 NucleusSignal transductionProtein DEKViral genome replicationSpecific RNA polymerase II transcription factor activity 1.10.10.60 70 11 78 3.86 4.91
1d8jA00 78.46 Basal transcription factorsTranscription initiation factor IIE subunit betaTranscription initiation factor TFIIE beta subunitHomo sapiensProtein binding 1.10.10.10 81 14 81 3.54 4.34
1gv2A02 78.41 Transcriptional activator MybNucleusEmbryonic digestive tract developmentProtein bindingMus musculus 1.10.10.60 46 8 67 3.04 4.53
1ldjA07 78.36 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 105 13 61 2.71 4.38
2raeA01 77.93 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 11 64 3.00 4.67
1e17A00 77.82 Transcription factor bindingNucleusCell cycle arrestForkhead box protein O4Insulin receptor signaling pathway 1.10.10.10 90 10 71 3.26 4.58
2hgcA00 77.55 Bacillus subtilisUncharacterized protein yjcQ 1.10.10.10 78 10 67 3.30 4.86
1a6qA02 77.26 Protein phosphatase 1AWnt receptor signaling pathwayProtein phosphatase 1A (formerly 2C) [EC:3.1.3.16]Positive regulation of transcription, DNA-dependentPositive regulation of I-kappaB kinase/NF-kappaB cascade 1.10.10.430 69 11 81 3.89 4.79
3cuqD00 77.15 ESCRT-II complex subunit VPS25Homo sapiensVacuolar protein-sorting-associated protein 25Endocytosis 1.10.10.570 97 14 69 3.10 4.49
2fq4A01 77.08 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 47 12 64 2.98 4.64
3ccyA01 77.05 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 9 61 2.20 3.60
3bqzA01 76.82 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 6 71 3.58 5.00
1rktA01 76.68 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yfiR 1.10.10.60 52 5 68 3.31 4.82
2hoeA01 76.53 Thermotoga maritimaTranscriptional regulator, XylR-related 1.10.10.10 57 5 76 2.80 3.68
2vkvA01 76.31 Escherichia coliTetracycline repressor protein class DTetracycline repressor protein class B from transposon Tn10 1.10.10.60 61 9 67 3.28 4.88
1ufmA00 76.31 COP9 signalosome complex subunit 4Mus musculusProtein bindingSignalosome 1.10.10.10 84 2 77 3.72 4.81
1pjrA02 75.74 Geobacillus stearothermophilusATP-dependent DNA helicase pcrA 1.10.10.160 72 5 72 3.33 4.61
1zk8A01 75.66 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 46 13 68 3.02 4.40
1zkgA01 75.60 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 8 68 2.74 3.99
1xd7A00 75.22 Bacillus subtilisPutative HTH-type transcriptional regulator ywnA 1.10.10.10 116 10 50 2.10 4.13
2id3A01 74.82 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 47 17 65 3.20 4.87
3f0cA01 73.69 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 10 70 3.36 4.79
3bqyA01 73.23 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 48 12 65 3.03 4.61
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Displaying entries 1 to 37 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1cf7A00
SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1cf7A00
PPGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVGP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"