CATH Domain: 1c1dA02 XML data for domain: 1c1dA02

Molscript image for 1c1dA02
1c1dA02
PDB coordinates for domain 1c1dA02

PDB 1c1d, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.3
3.40.50.720.3.1
3.40.50.720.3.1.1
3.40.50.720.3.1.1.1
3.40.50.720.3.1.1.1.1

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Segment boundaries for domain 1c1dA02

Chopping figure for domain 1c1dA02
DomainStart PDB ResidueStop PDB Residue
1c1dA01 3 64
1c1dA01 75 136
1c1dA01 339 349
1c1dA02 137 338

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 3.40.50.720.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gtmA02 84.70 Nitrogen metabolismPyrococcus furiosusArginine and proline metabolismGlutamate dehydrogenaseGlutamate dehydrogenase (NAD(P)+) 3.40.50.720 238 28 81 3.05 3.76
2eklA02 80.79 Sulfolobus tokodaiiD-3-phosphoglycerate dehydrogenaseGlycine, serine and threonine metabolism313aa long hypothetical D-3-phosphoglycerate dehydrogenase 3.40.50.720 191 16 72 2.81 3.86
1bgvA01 79.79 NAD-specific glutamate dehydrogenaseClostridium symbiosum 3.40.50.720 167 19 67 2.90 4.31
2g76A02 79.73 D-3-phosphoglycerate dehydrogenaseBrainBiosynthesis of serineGlycine, serine and threonine metabolismBrain development 3.40.50.720 188 13 71 2.77 3.89
2nacA02 79.18 Pseudomonas sp. 101Formate dehydrogenase 3.40.50.720 190 13 70 2.55 3.60
1hwxA03 79.06 Bos taurusGlutamate dehydrogenase 1, mitochondrial precursor 3.40.50.720 295 20 65 2.92 4.49
1ybaA02 79.05 Glycine, serine and threonine metabolismD-3-phosphoglycerate dehydrogenaseEscherichia coli O157:H7 3.40.50.720 184 14 67 2.59 3.85
1li4A02 78.98 Selenoamino acid metabolismMethionine metabolismCytoplasmAdenosylhomocysteinaseMetabolism of secondary products derived from L-methionine 3.40.50.720 160 13 68 3.09 4.49
1qp8A02 77.58 Pyrobaculum aerophilum2-hydroxyacid dehydrogenase 3.40.50.720 179 11 67 2.88 4.28
1h2bA02 77.35 Tyrosine metabolismFatty acid metabolismBile acid biosynthesis1- and 2-Methylnaphthalene degradationAeropyrum pernix 3.40.50.720 140 14 62 2.94 4.71
1lu9A02 76.86 3.40.50.720 151 12 62 3.01 4.79
1vi2A02 75.88 Phenylalanine, tyrosine and tryptophan biosynthesisQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenaseEscherichia coli K12Protein binding 3.40.50.720 147 10 61 2.89 4.71
1ml4A02 74.71 Pyrimidine metabolismPyrococcus abyssiAspartate carbamoyltransferaseAspartate carbamoyltransferase catalytic chainAlanine and aspartate metabolism 3.40.50.1370 158 12 62 3.11 4.95
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1c1dA02
FGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA
LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV
GREVLGWSESVVHERAVAIGDTLNQVFEISDNDGVTPDEAAR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1c1dA02
FGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA
LGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLV
GREVLGWSESVVHERAVAIGDTLNQVFEISDNDGVTPDEAAR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:16

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:16

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"