CATH Domain: 1c0wB01 XML data for domain: 1c0wB01

Molscript image for 1c0wB01
1c0wB01
PDB coordinates for domain 1c0wB01

PDB 1c0w, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.59
1.10.10.10.59.1
1.10.10.10.59.1.1
1.10.10.10.59.1.1.4
1.10.10.10.59.1.1.4.1

[top]
Segment boundaries for domain 1c0wB01

Chopping figure for domain 1c0wB01
DomainStart PDB ResidueStop PDB Residue
1c0wB01 2 73
1c0wB02 74 140
1c0wB03 147 226

Structural Neighbourhood (116 entries)

There are 116 matching structural neighberhood comparisons for CATH ID 1.10.10.10.59.1.1.4.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 116 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2hr3D02 88.69 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 61 16 81 1.95 2.39
2jt1A00 88.52 PefI proteinSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 71 8 88 1.84 2.07
2g7uA01 88.10 Rhodococcus opacusPutative regulator of catechol degradative operon 1.10.10.10 74 15 90 3.15 3.48
1w1wE00 87.99 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 4 90 2.56 2.84
3cuqB03 87.90 Homo sapiensVacuolar protein-sorting-associated protein 36ESCRT-II complex subunit VPS36Endocytosis 1.10.10.10 69 10 88 2.96 3.34
1lvaA03 87.80 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 62 9 83 2.25 2.71
1z05A01 87.32 Vibrio choleraeTranscriptional regulator, ROK family 1.10.10.10 72 8 81 2.15 2.62
1dpuA00 87.32 DNA-dependent DNA replicationReplication protein A 32 kDa subunitNucleotide excision repairDNA replicationReplication factor A2 1.10.10.10 69 14 90 2.36 2.62
1sfuA00 87.19 Yaba-like disease virus34L protein 1.10.10.10 70 5 90 3.43 3.81
1s3jA02 87.16 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.10.10.10 62 19 78 2.00 2.54
2heoA00 87.15 Mus musculusLeft-handed Z-DNA bindingZ-DNA-binding protein 1 1.10.10.10 59 10 83 2.24 2.70
1hw5A02 87.11 TranscriptionTranscription activator activityTranscription repressor activityCRP/FNR family transcriptional regulator, cyclic AMP receptor proteinCatabolite gene activator 1.10.10.10 68 16 81 2.11 2.58
2o0yB01 87.06 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 64 17 84 2.23 2.64
2pg4A00 86.58 Aeropyrum pernixPutative uncharacterized protein 1.10.10.10 90 29 78 1.96 2.48
1lvaA02 86.51 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 69 10 85 2.55 2.97
1mkmB01 86.19 Thermotoga maritimaTranscriptional regulator, IclR family 1.10.10.10 76 14 89 3.48 3.89
1ft9A02 86.19 Rhodospirillum rubrumCooA protein 1.10.10.10 79 11 86 3.50 4.07
2ia2C01 86.01 Rhodococcus sp. DK17PcaR 1.10.10.10 60 10 81 2.39 2.93
1ldjA06 85.93 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 68 7 78 2.17 2.75
1hstA00 85.89 Histone H1/5Gallus gallusHistone H5 1.10.10.10 74 11 83 2.77 3.31
1lvaA04 85.53 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 60 11 84 2.09 2.47
1tbxB00 85.44 Sulfolobus virus 1Protein F-93 1.10.10.10 89 15 75 1.87 2.48
2o0yC01 85.42 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 73 14 79 2.14 2.69
1j5yA01 85.39 Thermotoga maritimaTranscriptional regulator, biotin repressor family 1.10.10.10 64 18 85 2.97 3.46
2fnaA03 85.15 Sulfolobus solfataricusPutative uncharacterized protein 1.10.10.10 72 7 86 2.53 2.94
1u5tB02 84.91 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 69 7 81 2.26 2.77
2jtvA00 84.82 Rhodopseudomonas palustrisPutative uncharacterized protein 1.10.10.10 65 13 83 2.66 3.20
2hoeA01 84.77 Thermotoga maritimaTranscriptional regulator, XylR-related 1.10.10.10 57 24 73 2.06 2.81
1cf7A00 84.73 Protein domain specific bindingTranscription factor bindingE2F transcription factor 4/5Transcription factor E2F4TGF-beta signaling pathway 1.10.10.10 67 16 84 3.10 3.67
1ulyA01 84.50 Pyrococcus horikoshiiPutative uncharacterized protein PH1932 1.10.10.10 86 16 73 2.96 4.04
2dt5B01 84.35 Thermus thermophilus HB8Redox-sensing transcriptional repressor rexAT-rich DNA-binding protein 1.10.10.10 73 12 84 3.20 3.77
1bjaA00 84.28 Transcription regulatory protein motAEnterobacteria phage T4 1.10.10.10 95 18 69 2.08 2.99
2hgcA00 84.26 Bacillus subtilisUncharacterized protein yjcQ 1.10.10.10 78 11 79 2.57 3.23
3bz6A01 84.10 Hypothetical proteinPseudomonas syringae pv. tomatoUPF0502 protein PSPTO_2686 1.10.10.10 88 12 77 2.74 3.55
3i53B01 84.00 O-methyltransferaseStreptomyces carzinostaticus subsp. neocarzinostaticus 1.10.10.10 91 14 72 2.58 3.56
1p6rA00 83.91 Bacillus licheniformisPenicillinase repressor 1.10.10.10 82 9 81 3.75 4.59
1biaA01 83.91 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 1.10.10.10 64 9 85 3.01 3.50
1r1uB00 83.81 CzrA proteinStaphylococcus aureus 1.10.10.10 93 12 70 1.94 2.73
2dbbB01 83.79 Pyrococcus horikoshiiUncharacterized HTH-type transcriptional regulator PH0061 1.10.10.10 55 9 73 3.38 4.62
1yioA02 83.75 Response regulatory proteinPseudomonas fluorescens 1.10.10.10 59 13 81 3.30 4.04
2krfA00 83.73 Transcriptional regulatory protein comABacillus subtilisTwo-component systemTwo-component system, NarL family, competent response regulator ComA 1.10.10.10 69 10 83 3.26 3.92
1fseB00 83.70 Bacillus subtilisLuxR family transcriptional regulator, transcriptional regulator of spore coat proteinSpore germination protein gerE 1.10.10.10 70 14 85 3.36 3.91
1oyiA00 83.64 Vaccinia virusDouble-stranded RNA-binding protein 1.10.10.10 62 14 84 2.44 2.89
1q1hA00 83.62 Sulfolobus solfataricusTranscription initiation factor TFIIE alpha subunitTranscription factor EBasal transcription factors 1.10.10.10 85 15 75 2.88 3.83
3cloA02 83.55 Bacteroides thetaiotaomicronTranscriptional regulator 1.10.10.10 63 19 81 3.09 3.78
1l0oC00 83.43 RNA polymerase sigma factorGeobacillus stearothermophilusProtein binding 1.10.10.10 57 17 66 2.80 4.23
2w25A01 83.32 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 1.10.10.10 52 25 73 3.54 4.83
2hxoA01 83.10 Streptomyces coelicolorPutative TetR-family transcriptional regulator 1.10.10.60 63 12 78 3.02 3.83
1ub9A00 83.00 Pyrococcus horikoshiiPutative uncharacterized protein PH1061 1.10.10.10 100 14 67 2.47 3.69
1je8E00 82.98 Two-component systemEscherichia coli O157:H7Two-component system, NarL family, nitrate/nitrite response regulator NarLNitrate/nitrite response regulator protein narL 1.10.10.10 64 17 77 3.07 3.96
2hs5A01 82.86 Rhodococcus jostii RHA1Probable transcriptional regulator, GntR family protein 1.10.10.10 67 16 88 4.35 4.90
2vkvA01 82.82 Escherichia coliTetracycline repressor protein class DTetracycline repressor protein class B from transposon Tn10 1.10.10.60 61 14 77 3.22 4.16
1cf7B00 82.73 Protein domain specific bindingTranscription factor Dp-2Transcription cofactor activityHomo sapiens 1.10.10.10 82 5 73 2.93 4.00
3cuqA02 82.68 ESCRT-II complex subunit VPS22Transcription factor bindingRegulation of transcription from RNA polymerase II promoterHomo sapiensVacuolar-sorting protein SNF8 1.10.10.10 81 5 76 3.14 4.10
2a6hF02 82.53 Thermus thermophilus HB8RNA polymerase sigma factorRNA polymerase primary sigma factor 1.10.10.10 54 22 66 2.26 3.41
1ku9A01 82.48 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.10.10 83 12 68 2.10 3.06
2p5vA01 82.37 Neisseria meningitidis serogroup BTranscriptional regulator, AsnC familyLrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein 1.10.10.10 52 17 73 3.57 4.87
1o57A01 82.34 Pur operon repressorBacillus subtilisPurine operon repressor 1.10.10.10 72 7 84 3.62 4.27
3df8A00 82.23 Thermoplasma volcanium GSS1Putative uncharacterized protein TVG1336486 1.10.10.10 94 14 67 2.51 3.75
1xb4B02 81.88 Protein targeting to vacuoleESCRT-II complex subunit VPS25Saccharomyces cerevisiaeESCRT II complexVacuolar protein-sorting-associated protein 25 1.10.10.10 75 5 82 3.86 4.67
1l3lA02 81.73 Agrobacterium tumefaciensTranscriptional activator protein traR 1.10.10.10 61 19 80 3.16 3.94
2fq4A01 81.36 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 47 25 61 2.32 3.74
2fswA00 81.34 Porphyromonas gingivalisPutative uncharacterized protein 1.10.10.10 99 9 66 2.41 3.62
1zk8A01 81.34 Transcriptional regulator, TetR familyBacillus cereus ATCC 14579 1.10.10.60 46 17 61 2.46 3.97
2hxiA01 81.28 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 63 14 85 4.02 4.68
3f0cA01 81.21 Cytophaga hutchinsonii ATCC 33406Transcriptional regulator 1.10.10.60 47 6 63 2.08 3.28
1b4aA01 81.17 Geobacillus stearothermophilusArginine repressor 1.10.10.10 59 13 70 2.49 3.54
1t56A01 80.98 TRANSCRIPTIONAL REGULATORY REPRESSOR PROTEIN (TETR-FAMILY) ETHRMycobacterium tuberculosis 1.10.10.60 46 19 61 2.67 4.31
2np3B01 80.87 Streptomyces coelicolorPutative TetR-family regulator 1.10.10.60 60 18 74 3.33 4.46
2hyjA01 80.87 Streptomyces coelicolorPutative tetR-family transcriptional regulator 1.10.10.60 46 23 59 2.18 3.69
1fnnB03 80.84 Pyrobaculum aerophilumCell division control protein 6 (Cdc6), putativeArchaeal cell division control protein 6 1.10.10.10 103 9 68 3.07 4.45
1bbyA00 80.83 Basal transcription factorsGeneral transcription factor IIF subunit 2General RNA polymerase II transcription factor activityHomo sapiensTranscription initiation factor TFIIF beta subunit 1.10.10.10 69 7 84 3.27 3.87
1s6lA01 80.59 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 11 73 2.73 3.73
1rktA01 80.44 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yfiR 1.10.10.60 52 7 59 2.45 4.14
2id3A01 80.18 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 47 14 61 2.88 4.65
3bqyA01 80.07 Putative transcriptional regulatorStreptomyces coelicolor 1.10.10.60 48 18 64 2.49 3.84
1t33A01 80.04 Putative transcriptional repressor (TetR/AcrR family)Salmonella enterica subsp. enterica serovar Typhimurium 1.10.10.60 62 9 73 3.39 4.63
1zkgA01 80.01 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 10 61 2.34 3.78
3broD00 79.97 Oenococcus oeni PSU-1Transcriptional regulator 1.10.10.10 128 14 52 1.45 2.77
3ccyA01 79.91 Bordetella parapertussisPutative TetR-family transcriptional regulator 1.10.10.60 44 9 59 2.26 3.82
1fipA00 79.84 Escherichia coli O157:H7DNA-binding protein fisFis family transcriptional regulator, factor for inversion stimulation protein 1.10.10.60 73 4 58 2.56 4.35
3c2bA01 79.83 Agrobacterium tumefaciens str. C58Transcriptional regulator, TetR family 1.10.10.60 51 13 70 3.09 4.39
1umqA00 79.78 Rhodobacter sphaeroides 2.4.1Photosynthetic apparatus regulatory protein regA 1.10.10.60 60 11 60 2.62 4.33
3bqzA01 79.73 HTH-type transcriptional regulator qacRStaphylococcus aureus subsp. aureus Mu50 1.10.10.60 49 14 66 3.13 4.73
2id6A01 79.66 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 10 60 1.99 3.29
1etxA00 79.66 DNA-binding protein fisFis family transcriptional regulator, factor for inversion stimulation proteinProtein bindingEscherichia coli K-12 1.10.10.60 74 4 58 2.16 3.72
1e17A00 79.50 Transcription factor bindingNucleusCell cycle arrestForkhead box protein O4Insulin receptor signaling pathway 1.10.10.10 90 11 67 2.68 3.95
1jgsA00 79.45 Multiple antibiotic resistance protein marRMarR family transcriptional regulatorEscherichia coli K-12 1.10.10.10 138 11 48 1.53 3.15
1yyvB00 79.05 Putative transcriptional regulatorSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 107 16 58 2.69 4.57
3dfgA01 78.96 Xanthomonas campestris pv. campestrisRegulatory proteinRegulatory protein recX 1.10.10.10 48 8 63 2.98 4.70
1fp1D01 78.96 Medicago sativaIsoliquiritigenin 2'-O-methyltransferase 1.10.10.10 105 11 64 3.08 4.76
2rdpA00 78.85 Geobacillus stearothermophilusPutative transcriptional regulator MarR 1.10.10.10 135 16 48 1.84 3.82
2ibdA01 78.82 Rhodococcus jostii RHA1Possible transcriptional regulator 1.10.10.60 45 11 59 2.50 4.23
2ijlB00 78.35 Agrobacterium tumefaciens str. C58Molybdenum-binding transcriptional repressorMolybdate transport system regulatory protein 1.10.10.10 103 12 58 2.46 4.22
1lj9B00 78.29 Enterococcus faecalisTranscriptional regulator, MarR family 1.10.10.10 142 18 47 1.43 3.03
2fd5A01 78.20 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.60 48 8 59 2.57 4.34
2nnnC00 78.01 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 131 18 50 1.63 3.24
2fbhA00 78.01 Probable transcriptional regulatorPseudomonas aeruginosaMarR family transcriptional regulator, transcriptional regulator for hemolysin 1.10.10.10 137 18 49 1.77 3.57
1xd7A00 77.91 Bacillus subtilisPutative HTH-type transcriptional regulator ywnA 1.10.10.10 116 7 57 2.58 4.47
3bddD00 77.86 Streptococcus suis 89/1591Transcriptional regulator, MarR family 1.10.10.10 128 18 50 2.05 4.10
3fm5A00 77.77 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 124 19 50 2.38 4.76
2qwwC00 77.77 Listeria monocytogenes serotype 4b str. F2365Transcriptional regulator, MarR family 1.10.10.10 130 22 50 2.48 4.88
3cdhA00 77.76 Ruegeria pomeroyiTranscriptional regulator, MarR family 1.10.10.10 129 16 48 1.86 3.87
2nyxB01 77.60 PROBABLE TRANSCRIPTIONAL REGULATORY PROTEINMycobacterium tuberculosis 1.10.10.10 140 14 47 1.63 3.46
1p4xA02 77.58 Staphylococcus aureus subsp. aureus NCTC 8325HTH-type transcriptional regulator sarS 1.10.10.10 123 11 56 2.57 4.58
2raeA01 77.42 Rhodococcus jostii RHA1Transcriptional regulator, AcrR family protein 1.10.10.60 43 18 57 2.25 3.90
2a61B00 77.33 Thermotoga maritimaTranscriptional regulator, MarR family 1.10.10.10 136 22 48 1.97 4.06
3bj6B00 77.30 Ruegeria pomeroyiTranscriptional regulator, MarR family 1.10.10.10 148 15 44 1.64 3.68
3cjnA00 76.82 Ruegeria pomeroyiTranscriptional regulator, MarR family 1.10.10.10 139 18 48 2.17 4.50
2fxaA00 76.52 Bacillus subtilisMarR family transcriptional regulator, protease production regulatory protein HPrHTH-type transcriptional regulator hpr 1.10.10.10 147 14 44 1.66 3.75
2fbiA00 76.43 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 136 16 49 1.97 4.00
3cuqD00 76.25 ESCRT-II complex subunit VPS25Homo sapiensVacuolar protein-sorting-associated protein 25Endocytosis 1.10.10.570 97 5 61 3.06 4.95
1tt5B02 76.22 Protein heterodimerization activityNucleusUbiquitin-activating enzyme E1 C [EC:6.3.2.19]Homo sapiensNEDD8-activating enzyme E1 catalytic subunit 1.10.10.520 77 5 58 2.78 4.76
3e6mA00 76.18 Ruegeria pomeroyiTranscriptional regulator, MarR family 1.10.10.10 145 16 45 1.86 4.09
3boqA00 75.37 Ruegeria pomeroyiTranscriptional regulator, MarR family 1.10.10.10 131 22 46 1.97 4.23
1ldkB03 73.65 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 83 2 69 3.45 4.94
[1]
Displaying entries 1 to 116 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1c0wB01
KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLAT
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1c0wB01
KDLVDTTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLAT
BLAST against CATH

[top]
Domain History Events (9)

Domain assigned by auto on 22 Aug 2007 18:32

Assigning to "1.10.10.10" based on similarity with "1c0wD01"

Flow stage update by auto on 22 Aug 2007 18:31

No in_process hits for Domain "1c0wB01" ready to be processed

Update comment by auto on 22 Aug 2007 18:24

Domain "1c0wB01" hits Domain "1c0wD01" (100% over 98.6301369863014%) which is currently in process

Update comment by auto on 22 Aug 2007 15:20

Domain "1c0wB01" hits Domain "1c0wA01" (100% over 98.6301369863014%) which is currently in process

Flow stage update by auto on 22 Aug 2007 15:19

Domain "1c0wB01" hits Domain "1c0wA01" (100% over 98.6301369863014%) which is currently in process

Flow stage update by auto on 22 Aug 2007 15:19

NW result present for Domain "1c0wB01"

Flow stage update by auto on 19 Aug 2007 10:12

All required files are present for Domain "1c0wB01"

Flow stage update by auto on 18 Aug 2007 20:23

Beginning processing for Domain "1c0wB01"

Insertion by auto on 18 Aug 2007 18:29

Final ChopClose added based on similarity with "1fx7A"