CATH Domain: 1byiA00 XML data for domain: 1byiA00

Molscript image for 1byiA00
1byiA00
PDB coordinates for domain 1byiA00

PDB 1byi, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.300 P-loop containing nucleotide triphosphate hydrolases Gene3D
3.40.50.300.1
3.40.50.300.1.1
3.40.50.300.1.1.1
3.40.50.300.1.1.1.1
3.40.50.300.1.1.1.1.1

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Segment boundaries for domain 1byiA00

Chopping figure for domain 1byiA00
DomainStart PDB ResidueStop PDB Residue
1byiA00 1 224

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.40.50.300.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qmoA00 85.81 Biotin metabolismDethiobiotin synthetaseHelicobacter pyloriDethiobiotin synthetase [EC:6.3.3.3]Metabolic pathways 3.40.50.300 216 19 90 2.40 2.64
1vmaA02 79.31 Protein exportBacterial secretion systemThermotoga maritimaCell division protein FtsYFused signal recognition particle receptor 3.40.50.300 211 9 81 3.69 4.53
2j45A02 77.82 Thermus aquaticusSignal recognition particle proteinProtein binding 3.40.50.300 191 12 81 3.71 4.53
1g3qA00 77.77 Pyrococcus furiosusCell division inhibitor minD homologSeptum site-determining protein MinD 3.40.50.300 237 14 80 3.54 4.39
3ea0A00 76.97 Pilus assembly protein CpaEChlorobaculum tepidumATPase, ParA family 3.40.50.300 237 10 79 3.88 4.87
2obnA02 76.96 Anabaena variabilis ATCC 29413Putative uncharacterized protein 3.40.50.300 208 13 76 3.56 4.63
1cp2A00 75.14 Nitrogenase iron protein 1Clostridium pasteurianum 3.40.50.300 269 10 72 3.59 4.98
3cwqA00 74.91 ParA family chromosome partitioning proteinSynechocystis sp. PCC 6803 3.40.50.300 204 9 77 3.68 4.73
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1byiA00
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1byiA00
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1byi000" to "1byiA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:13

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:13

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"