CATH Domain: 1byfA00 XML data for domain: 1byfA00

Molscript image for 1byfA00
1byfA00
PDB coordinates for domain 1byfA00

PDB 1byf, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.22
3.10.100.10.22.1
3.10.100.10.22.1.1
3.10.100.10.22.1.1.1
3.10.100.10.22.1.1.1.1

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Segment boundaries for domain 1byfA00

Chopping figure for domain 1byfA00
DomainStart PDB ResidueStop PDB Residue
1byfA00 2 124

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.10.100.10.22.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bdwA00 86.75 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 15 88 2.56 2.89
1sl6A00 84.87 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 21 69 2.07 2.97
1rjhA00 83.05 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 14 87 2.90 3.30
1eslA00 82.42 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 22 74 2.65 3.56
3fd4A00 81.23 Glycoprotein 42Human herpesvirus 4 (strain B95-8) 3.10.100.10 140 9 75 2.63 3.47
1f00I03 78.61 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 3.10.100.10 98 16 72 3.45 4.77
1cwvA05 78.46 InvasinYersinia pseudotuberculosis 3.10.100.10 100 10 68 2.83 4.14
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1byfA00
DYEILFSDETMNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYWVGADNLQDGAYNFLWNDGVSLPTDSDL
WSPNEPSNPQSWQLCVQIWSKYNLLDDVGCGGARRVICEKELD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1byfA00
MDYEILFSDETMNYADAGTYCQSRGMALVSSAMRDSTMVKAILAFTEVKGHDYWVGADNLQDGAYNFLWNDGVSLPTDSD
LWSPNEPSNPQSWQLCVQIWSKYNLLDDVGCGGARRVICEKELDD
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"