CATH Domain: 1bxoA02 XML data for domain: 1bxoA02

Molscript image for 1bxoA02
1bxoA02
PDB coordinates for domain 1bxoA02

PDB 1bxo, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.1
2.40.70.10.1.1
2.40.70.10.1.1.1
2.40.70.10.1.1.1.1
2.40.70.10.1.1.1.1.1

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Segment boundaries for domain 1bxoA02

Chopping figure for domain 1bxoA02
DomainStart PDB ResidueStop PDB Residue
1bxoA01 6 170
1bxoA02 171 322

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 2.40.70.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2aprA02 90.39 RhizopuspepsinRhizopus microsporus var. chinensis 2.40.70.10 149 35 96 1.72 1.78
3psgA02 87.30 Sus scrofaPepsin A 2.40.70.10 155 31 94 2.17 2.30
1hrnA02 86.54 Renin-angiotensin systemAngiotensin maturationRegulation of MAPKKK cascadeExtracellular spaceRenin 2.40.70.10 158 23 93 2.86 3.05
1dpjA02 86.50 Cellular response to starvationSporulation resulting in formation of a cellular sporeProteolysis involved in cellular protein catabolic processFungal-type vacuole lumenSaccharopepsin 2.40.70.10 154 25 94 2.12 2.24
1j71A02 86.22 Candida tropicalisCandidapepsin 2.40.70.10 161 28 90 2.19 2.42
2bjuA02 86.21 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 154 21 94 2.35 2.48
1wkrA02 85.15 Irpex lacteusPolyporopepsin 2.40.70.10 170 26 85 2.52 2.95
1mppA02 81.86 Rhizomucor pusillusMucorpepsin 2.40.70.10 175 26 83 2.72 3.26
2zjlA02 81.64 Beta-secretase 1Integral to plasma membraneBeta-aspartyl-peptidase activityProtein bindingBeta-amyloid metabolic process 2.40.70.10 197 23 67 2.31 3.45
1t6eX02 79.77 Triticum aestivumXylanase inhibitor 2.40.70.10 187 17 79 2.69 3.38
1lyaB00 79.33 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 241 26 61 2.29 3.70
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bxoA02
DSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCS
TNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bxoA02
DSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCS
TNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQ
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"