CATH Domain: 1bxoA01 XML data for domain: 1bxoA01

Molscript image for 1bxoA01
1bxoA01
PDB coordinates for domain 1bxoA01

PDB 1bxo, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.3
2.40.70.10.3.1
2.40.70.10.3.1.1
2.40.70.10.3.1.1.1
2.40.70.10.3.1.1.1.1

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Segment boundaries for domain 1bxoA01

Chopping figure for domain 1bxoA01
DomainStart PDB ResidueStop PDB Residue
1bxoA01 6 170
1bxoA02 171 322

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.40.70.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wkrA01 87.58 Irpex lacteusPolyporopepsin 2.40.70.10 170 26 86 1.81 2.09
1mppA01 87.34 Rhizomucor pusillusMucorpepsin 2.40.70.10 181 30 89 1.88 2.10
1j71A01 85.98 Candida tropicalisCandidapepsin 2.40.70.10 173 22 87 2.07 2.36
1pfzB01 83.84 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 155 20 86 2.07 2.41
1b5fC00 82.01 Preprocardosin ACynara cardunculus 2.40.70.10 238 26 65 1.59 2.44
1t6eX01 78.32 Triticum aestivumXylanase inhibitor 2.40.70.10 174 16 76 2.88 3.77
1lyaA00 77.17 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 97 25 52 1.94 3.68
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bxoA01
ATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNV
FTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVY
DFGFI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bxoA01
ATNTPTANDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGSSASGNV
FTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAFSSINTVQPQSQTTFFDTVKSSLAQPLFAVALKHQQPGVY
DFGFI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"