CATH Domain: 1bvsF03 XML data for domain: 1bvsF03

Molscript image for 1bvsF03
1bvsF03
PDB coordinates for domain 1bvsF03

PDB 1bvs, Chain F, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.10 DNA helicase RuvA subunit, C-terminal domain Gene3D
1.10.8.10.16
1.10.8.10.16.1
1.10.8.10.16.1.1
1.10.8.10.16.1.1.1
1.10.8.10.16.1.1.1.1

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Segment boundaries for domain 1bvsF03

Chopping figure for domain 1bvsF03
DomainStart PDB ResidueStop PDB Residue
1bvsF01 1 65
1bvsF02 66 147
1bvsF03 148 199

Structural Neighbourhood (24 entries)

There are 24 matching structural neighberhood comparisons for CATH ID 1.10.8.10.16.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 24 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1dv0A00 86.15 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 45 17 82 1.74 2.12
1djxB01 82.43 Calcium ion bindingCalcium signaling pathwayPhosphatidylinositol signaling systemRattus norvegicusElevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger 1.10.238.10 52 8 84 2.94 3.47
1ifyA00 81.58 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 1.10.8.10 49 8 87 3.08 3.51
1lp1B00 80.13 Staphylococcus aureusImmunoglobulin G-binding protein A 1.20.5.420 54 11 79 3.84 4.82
1okkD01 80.09 Cell division protein ftsYThermus aquaticusProtein binding 1.20.120.140 58 15 77 3.08 3.97
1njgA02 79.26 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 13 65 2.10 3.22
1j09A04 78.27 Aminoacyl-tRNA biosynthesisThermus thermophilus HB8Porphyrin and chlorophyll metabolismGlutamyl-tRNA synthetase [EC:6.1.1.17]Glutamyl-tRNA synthetase 1.10.8.70 48 8 83 3.99 4.79
3b7nA01 78.23 CRAL-TRIO domain-containing protein YKL091CNucleusSaccharomyces cerevisiae 1.10.8.20 79 4 56 2.59 4.55
1v92A00 78.20 Rattus norvegicusGolgi organizationCellular membrane fusionNSFL1 cofactor p47Protein binding 1.10.8.10 46 13 76 2.97 3.90
1sxjE02 78.19 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 11 57 2.35 4.06
1q02A00 77.98 Positive regulation of transcription from RNA polymerase II promoterProtein localizationProtein kinase C bindingCytosolUbiquitin binding 1.10.8.10 52 8 82 4.11 4.97
1tizA00 77.57 Calcium-binding protein CMLArabidopsis thalianaPlant-pathogen interactionProbable calcium-binding protein CML34 1.10.238.10 66 4 66 2.92 4.38
1njgB01 77.33 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 73 13 58 2.13 3.62
1rj9A01 77.20 Cell division protein ftsYThermus aquaticusProtein binding 1.20.120.140 81 17 54 2.39 4.40
1wivA00 77.10 Embryo development ending in seed dormancyUbiquitin carboxyl-terminal hydrolase 5/13 [EC:3.1.2.15]Ubiquitin carboxyl-terminal hydrolase 14Arabidopsis thalianaUbiquitin-specific protease activity 1.10.8.10 73 20 53 2.34 4.38
1s26D01 76.81 Calcium signaling pathwayPhosphatidylinositol signaling systemOocyte meiosisMelanogenesisInsulin signaling pathway 1.10.238.10 59 6 72 2.88 3.95
2chgA02 76.79 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 13 57 2.66 4.62
3bosA02 76.48 DnaA-homolog proteinShewanella amazonensis SB2BRegulatory inactivation of DnaA Hda protein 1.10.8.60 59 11 59 2.49 4.20
1otrA00 75.66 Saccharomyces cerevisiaeProtein bindingUbiquitin-binding protein CUE2 1.10.8.10 49 4 85 3.36 3.92
1ftsA01 74.97 Protein exportBacterial secretion systemCell division protein ftsYFused signal recognition particle receptorEscherichia coli K-12 1.20.120.140 84 6 53 2.18 4.07
1l8qA02 74.65 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 6 77 2.68 3.46
2px6A02 74.21 Insulin signaling pathwayFatty acid biosynthesisFatty acid synthaseProtein bindingMetabolic pathways 1.10.1470.20 73 13 56 2.43 4.33
1in4A03 74.01 Holliday junction DNA helicase RuvBThermotoga maritimaHomologous recombinationHolliday junction ATP-dependent DNA helicase ruvB 1.10.8.60 75 8 60 2.61 4.35
2gqfA03 71.41 Haemophilus influenzaeUncharacterized protein HI_0933 1.10.8.260 60 6 40 1.80 4.50
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Displaying entries 1 to 24 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bvsF03
NAVRGSVVEALVGLGFAAKQAEEATDQVLDGEATSSALRAALSLL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bvsF03
NAVRGSVVEALVGLGFAAKQAEEATDQVLDGELGKDGAVATSSALRAALSLL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:14

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"