CATH Domain: 1bkjA00 XML data for domain: 1bkjA00

Molscript image for 1bkjA00
1bkjA00
PDB coordinates for domain 1bkjA00

PDB 1bkj, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.109 NADH Oxidase
3.40.109.10 NADH Oxidase Gene3D
3.40.109.10.9
3.40.109.10.9.1
3.40.109.10.9.1.1
3.40.109.10.9.1.1.1
3.40.109.10.9.1.1.1.1

[top]
Segment boundaries for domain 1bkjA00

Chopping figure for domain 1bkjA00
DomainStart PDB ResidueStop PDB Residue
1bkjA00 2 240

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.40.109.10.9.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2b67A00 82.93 [EC:1.-.-.-]Nitroreductase family proteinStreptococcus pneumoniae 3.40.109.10 198 19 74 2.62 3.50
2i7hA00 79.73 Nitroreductase familyBacillus cereus ATCC 14579 3.40.109.10 183 16 72 2.74 3.80
[1]
Displaying entries 1 to 2 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1bkjA00
NNTIETILAHRSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFCI
DYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPENSAVLFGMCLGHPD
QNPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYSTWSQEVTGKLAGESRPHILPYLNSKGLAKR
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1bkjA00
MNNTIETILAHRSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFC
IDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPENSAVLFGMCLGHP
DQNPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYASRTSNQKLSTWSQEVTGKLAGESRPHILPYLNSKGLAKR
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:47

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"