CATH Domain: 1bkfA00 XML data for domain: 1bkfA00

Molscript image for 1bkfA00
1bkfA00
PDB coordinates for domain 1bkfA00

PDB 1bkf, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.50 Chitinase A; domain 3
3.10.50.40 Gene3D
3.10.50.40.2
3.10.50.40.2.1
3.10.50.40.2.1.1
3.10.50.40.2.1.1.1
3.10.50.40.2.1.1.1.1

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Segment boundaries for domain 1bkfA00

Chopping figure for domain 1bkfA00
DomainStart PDB ResidueStop PDB Residue
1bkfA00 1 107

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 3.10.50.40.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1q6hA02 92.72 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]FKBP-type peptidyl-prolyl cis-trans isomerase fkpAEscherichia coli K-12 3.10.50.40 103 46 96 1.24 1.29
1r9hA00 92.07 Caenorhabditis elegansMorphogenesis of an epitheliumFK506-binding protein 4/5 [EC:5.2.1.8]LocomotionProtein F31D4.3, confirmed by transcript evidence 3.10.50.40 118 48 90 0.85 0.94
3b7xA00 88.67 Homo sapiensPeptidyl-prolyl cis-trans isomerase FKBP6FK506 bindingProtein folding 3.10.50.40 117 31 83 1.48 1.77
1q1cA02 88.26 CytoplasmFK506-binding protein 4/5 [EC:5.2.1.8]Protein binding, bridgingPeptidyl-prolyl cis-trans isomerase FKBP4Heat shock protein binding 3.10.50.40 118 27 85 1.65 1.93
1jvwA00 84.24 Macrophage infectivity potentiatorTrypanosoma cruzi 3.10.50.40 160 45 65 1.36 2.07
1hxvA00 80.68 Trigger factorTrigger factorMycoplasma genitalium 3.10.50.40 85 21 78 2.66 3.39
1m5yA03 78.85 Chaperone surAChaperone mediated protein folding requiring cofactorMaintenance of stationary phasePeptidyl-prolyl cis-trans isomerase activityBiofilm formation 3.10.50.40 107 5 66 3.08 4.64
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bkfA00
GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY
AYGATGVPGIIPPHATLVFDVELLKLE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bkfA00
GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY
AYGATGVPGIIPPHATLVFDVELLKLE
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bkf000" to "1bkfA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"