CATH Domain: 1bjtA05 XML data for domain: 1bjtA05

Molscript image for 1bjtA05
1bjtA05
PDB coordinates for domain 1bjtA05

PDB 1bjt, Chain A, Domain 5

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.199 Topoisomerase II; domain 5
3.90.199.10 Topoisomerase II, domain 5 Gene3D
3.90.199.10.1
3.90.199.10.1.1
3.90.199.10.1.1.1
3.90.199.10.1.1.1.1
3.90.199.10.1.1.1.1.1

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Segment boundaries for domain 1bjtA05

Chopping figure for domain 1bjtA05
DomainStart PDB ResidueStop PDB Residue
1bjtA01 575 617
1bjtA02 421 574
1bjtA02 618 681
1bjtA03 1009 1149
1bjtA04 872 973
1bjtA05 682 871
1bjtA05 974 1008
1bjtA05 1150 1173

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 3.90.199.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3l4jA03 90.60 Reciprocal meiotic recombinationRegulation of mitotic recombinationDNA topoisomerase 2DNA strand elongation involved in DNA replicationDNA topoisomerase II [EC:5.99.1.3] 3.90.199.10 184 100 73 1.09 1.48
1ab4A01 84.54 DNA-dependent DNA replicationMembraneDNA-dependent ATPase activityDNA gyrase subunit ADNA topological change 3.90.199.10 271 27 87 3.36 3.86
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bjtA05
LFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLL
LPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYI
PPFNPLEIIKNIRHLMNDEELEQMHPWFRGNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRSAKDIWNTDLKAFEV
GYQEFLQRD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bjtA05
LFSLADNIRSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTAYHHGEQSLAQTIIGLAQNFVGSNNIYLL
LPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKTVEPEWYLPILPMILVNGAEGIGTGWSTYI
PPFNPLEIIKNIRHLMNDEELEQMHPWFRGNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRSAKDIWNTDLKAFEV
GYQEFLQRD
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bjt005" to "1bjtA05" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"