CATH Domain: 1bjtA03 XML data for domain: 1bjtA03

Molscript image for 1bjtA03
1bjtA03
PDB coordinates for domain 1bjtA03

PDB 1bjt, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.268 Topoisomerase; domain 3
1.10.268.10 Topoisomerase, domain 3 Gene3D
1.10.268.10.3
1.10.268.10.3.1
1.10.268.10.3.1.1
1.10.268.10.3.1.1.1
1.10.268.10.3.1.1.1.1

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Segment boundaries for domain 1bjtA03

Chopping figure for domain 1bjtA03
DomainStart PDB ResidueStop PDB Residue
1bjtA01 575 617
1bjtA02 421 574
1bjtA02 618 681
1bjtA03 1009 1149
1bjtA04 872 973
1bjtA05 682 871
1bjtA05 974 1008
1bjtA05 1150 1173

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 1.10.268.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bgwA03 96.11 Reciprocal meiotic recombinationRegulation of mitotic recombinationDNA topoisomerase 2DNA topoisomerase II [EC:5.99.1.3]DNA strand elongation involved in DNA replication 1.10.268.10 110 100 96 0.60 0.62
1jr3D02 74.88 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.20.272.20 125 6 60 2.82 4.64
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bjtA03
KDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPEELYGTYEYLLGMRIWS
LTKERYQKLLKQKQEKETELENLLKL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bjtA03
KDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPEELYGTYEYLLGMRIWS
LTKERYQKLLKQKQEKETELENLLKL
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bjt003" to "1bjtA03" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:07

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"