CATH Domain: 1bioA01 XML data for domain: 1bioA01

Molscript image for 1bioA01
1bioA01
PDB coordinates for domain 1bioA01

PDB 1bio, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.10 Thrombin, subunit H
2.40.10.10 Trypsin-like serine proteases Gene3D
2.40.10.10.36
2.40.10.10.36.1
2.40.10.10.36.1.1
2.40.10.10.36.1.1.1
2.40.10.10.36.1.1.1.1

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Segment boundaries for domain 1bioA01

Chopping figure for domain 1bioA01
DomainStart PDB ResidueStop PDB Residue
1bioA01 16 27
1bioA01 123 232
1bioA02 28 122
1bioA02 233 243

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.40.10.10.36.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2o8tA01 91.41 Regulation of smooth muscle cell migrationCell surfaceUrokinase-type plasminogen activatorSignal transductionProteolysis 2.40.10.10 128 31 94 1.43 1.51
1eq9A01 91.09 Chymotrypsin-1Solenopsis invicta 2.40.10.10 117 31 95 1.67 1.76
1k2i101 90.74 Bos taurusChymotrypsinogen A 2.40.10.10 118 36 92 1.59 1.72
2asuB01 90.02 Hepatocyte growth factor-like proteinHomo sapiens 2.40.10.10 122 34 94 1.97 2.09
2hlcA02 89.35 CollagenaseHypoderma lineatum 2.40.10.10 126 28 91 1.86 2.04
2bvrH01 89.12 FibrinolysisSerine-type endopeptidase activityProthrombinSoluble fractionPositive regulation of protein phosphorylation 2.40.10.10 132 31 89 1.89 2.11
3gylB01 88.72 ProstasinPlasma membraneProtease, serine, 8 (prostasin) [EC:3.4.21.-]Homo sapiensExtracellular space 2.40.10.10 133 34 88 1.72 1.94
1elvA02 88.62 Serine-type endopeptidase activitySystemic lupus erythematosusComplement C1s subcomponentHomo sapiensComplement component 1, s subcomponent [EC:3.4.21.42] 2.40.10.10 126 29 90 2.36 2.61
1q3xA02 88.24 Serine-type endopeptidase activityHomo sapiensMannan-binding lectin serine protease 2Calcium-dependent protein bindingComplement activation, lectin pathway 2.40.10.10 137 30 86 2.02 2.33
1si5H01 88.16 Pathways in cancerHepatocyte growth factorEpithelial to mesenchymal transitionRenal cell carcinomaCytokine-cytokine receptor interaction 2.40.10.10 119 27 91 2.01 2.19
1nn6A01 84.81 ChymaseChymase [EC:3.4.21.39]Homo sapiensRenin-angiotensin systemInterleukin-1 beta biosynthetic process 2.40.10.10 114 37 93 3.44 3.68
1yphE00 83.15 Bos taurusChymotrypsinogen A 2.40.10.10 97 34 65 1.81 2.76
1y8tB02 80.72 Two-component systemPutative serine protease PepD [EC:3.4.21.-]PROBABLE SERINE PROTEASE PEPD (SERINE PROTEINASE) (MTB32B)Mycobacterium tuberculosis 2.40.10.10 111 13 70 2.65 3.76
2qf3B02 80.46 Protease degSProtein bindingSerine protease DegS [EC:3.4.21.-]Escherichia coli K-12 2.40.10.10 103 13 73 3.16 4.28
1dleB02 78.32 Complement factor BComplement bindingHomo sapiensComponent factor B [EC:3.4.21.47]Complement and coagulation cascades 2.40.10.10 142 13 67 2.65 3.92
1svpA02 72.81 Sindbis virusStructural polyprotein 2.40.10.10 86 8 56 2.66 4.70
3fanA02 71.47 Porcine reproductive and respiratory syndrome virusNon-structural protein 2.40.10.10 69 20 50 2.43 4.78
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bioA01
ILGGREAEAHARLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR
RDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bioA01
ILGGREAEAHARLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR
RDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVA
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bio001" to "1bioA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"