CATH Domain: 1biaA03 XML data for domain: 1biaA03

Molscript image for 1biaA03
1biaA03
PDB coordinates for domain 1biaA03

PDB 1bia, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.17
2.30.30.100.17.1
2.30.30.100.17.1.1
2.30.30.100.17.1.1.1
2.30.30.100.17.1.1.1.1

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Segment boundaries for domain 1biaA03

Chopping figure for domain 1biaA03
DomainStart PDB ResidueStop PDB Residue
1biaA01 1 64
1biaA02 65 270
1biaA03 271 317

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 2.30.30.100.17.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2g3rA01 84.04 CytoplasmHomo sapiensTumor suppressor p53-binding protein 1Protein binding 2.30.30.140 53 21 88 3.01 3.39
1mmdA01 82.44 ActomyosinMyosin II complexActin-myosin filament slidingProtein localizationActin filament binding 2.30.30.360 48 12 89 3.76 4.20
2k57A00 82.38 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 12 83 2.49 2.98
1mhnA00 81.08 Survival motor neuron proteinSurvival motor neuron proteinHomo sapiensProtein binding 2.30.30.140 59 10 79 3.19 4.00
1igqB00 80.06 Escherichia coliTranscriptional repressor protein korB 2.30.30.150 57 14 75 3.21 4.26
1ib8A02 79.85 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 10 68 2.23 3.25
1khcA01 79.61 Protein complex localizationRegulation of gene expression by genetic imprintingDNA (cytosine-5)-methyltransferase 3BChromosome, centromeric regionProtein binding 2.30.30.160 65 12 72 3.19 4.41
1irxA02 78.88 Aminoacyl-tRNA biosynthesisLysyl-tRNA synthetase, class I [EC:6.1.1.6]Pyrococcus horikoshiiLysyl-tRNA synthetase 2.30.30.300 43 6 87 3.94 4.52
1sf9A02 77.69 Bacillus subtilisUncharacterized protein yfhH 2.30.30.340 54 2 79 3.49 4.38
3be3A00 74.01 Bordetella bronchisepticaPutative uncharacterized protein 2.30.30.320 75 6 58 2.86 4.88
1pm3A00 74.01 Methanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 2.30.30.240 69 10 65 2.58 3.96
3g1jA00 73.50 Integron cassette proteinVibrio cholerae 2.30.30.350 87 8 54 2.70 5.00
2f1lA02 71.25 Pseudomonas aeruginosaRibosome maturation factor rimM16S rRNA processing protein RimM 2.30.30.240 72 4 61 2.98 4.88
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1biaA03
FINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1biaA03
FINRPVKLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bia003" to "1biaA03" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"