CATH Domain: 1bh9B00 XML data for domain: 1bh9B00

Molscript image for 1bh9B00
1bh9B00
PDB coordinates for domain 1bh9B00

PDB 1bh9, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.13
1.10.20.10.13.1
1.10.20.10.13.1.1
1.10.20.10.13.1.1.1
1.10.20.10.13.1.1.1.1

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Segment boundaries for domain 1bh9B00

Chopping figure for domain 1bh9B00
DomainStart PDB ResidueStop PDB Residue
1bh9B00 113 201

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 1.10.20.10.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1h3oB00 85.56 General RNA polymerase II transcription factor activityTranscription initiation factor TFIID subunit 12STAGA complexHistone H3 acetylationPlasma membrane 1.10.20.10 71 15 78 2.98 3.79
1tafB00 85.55 Transcription initiation factor TFIID subunit D5Transcription factor TFIID complexTranscription initiation factor TFIID subunit 6Drosophila melanogasterProtein binding 1.10.20.10 69 14 77 2.39 3.08
1tafA00 84.70 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 10 75 1.81 2.40
1jfiA00 83.89 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 20 69 1.70 2.44
1bh9A00 79.29 Basal transcription factorsTranscription factor TFIID complexTranscription initiation factor TFIID subunit D11Protein C-terminus bindingTranscription initiation factor TFIID subunit 13 1.10.20.10 45 8 49 1.28 2.59
1h3oA00 78.88 General RNA polymerase II transcription factor activityTranscription coactivator activityBasal transcription factorsTranscription factor TFIID complexCytoplasm 1.10.20.10 48 20 49 1.21 2.45
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bh9B00
FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR
RLKSKGQIP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bh9B00
FSEEQLNRYEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR
RLKSKGQIP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"