CATH Domain: 1bgvA01 XML data for domain: 1bgvA01

Molscript image for 1bgvA01
1bgvA01
PDB coordinates for domain 1bgvA01

PDB 1bgv, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.96
3.40.50.720.96.1
3.40.50.720.96.1.1
3.40.50.720.96.1.1.1
3.40.50.720.96.1.1.1.1

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Segment boundaries for domain 1bgvA01

Chopping figure for domain 1bgvA01
DomainStart PDB ResidueStop PDB Residue
1bgvA01 207 373
1bgvA02 52 187
1bgvA03 1 51
1bgvA03 425 449

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.40.50.720.96.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gtmA02 80.36 Nitrogen metabolismPyrococcus furiosusGlutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3]Arginine and proline metabolismGlutamate dehydrogenase 3.40.50.720 238 29 65 2.14 3.29
1li4A02 79.31 Selenoamino acid metabolismMetabolic pathwaysCysteine and methionine metabolismAdenosylhomocysteinaseAdenosylhomocysteinase [EC:3.3.1.1] 3.40.50.720 160 11 80 3.25 4.05
1vi2A02 78.31 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenase [EC:1.1.1.282]Shikimate 5-dehydrogenase activity 3.40.50.720 147 15 76 3.55 4.67
2eggA02 78.02 Shikimate 5-dehydrogenase [EC:1.1.1.25]Geobacillus kaustophilusPhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenaseMetabolic pathways 3.40.50.720 140 16 77 3.87 4.97
1a4iB01 78.01 Methenyltetrahydrofolate cyclohydrolase activityHomo sapiensC-1-tetrahydrofolate synthase, cytoplasmicMitochondrionProtein binding 3.40.50.720 137 11 66 2.36 3.55
3d4oA02 77.92 Dipicolinate synthase subunit ABacillus haloduransDipicolinate synthase subunit A 3.40.50.720 139 16 74 3.07 4.13
1edzA01 77.32 One carbon pool by folateIdentical protein bindingMethylenetetrahydrofolate dehydrogenase (NAD+) [EC:1.5.1.15]Purine base biosynthetic processMethylenetetrahydrofolate dehydrogenase (NAD+) activity 3.40.50.720 156 12 80 3.69 4.56
3etgD03 76.84 Bos taurusGlutamate dehydrogenase 1, mitochondrial 3.40.50.720 293 26 52 2.06 3.92
1qp8A02 76.73 Pyrobaculum aerophilum2-hydroxyacid dehydrogenase 3.40.50.720 179 11 73 3.32 4.54
3c8mA01 76.17 Thermoplasma volcanium GSS1Homoserine dehydrogenase [EC:1.1.1.3]Cysteine and methionine metabolismGlycine, serine and threonine metabolismHomoserine dehydrogenase 3.40.50.720 157 9 74 3.35 4.51
1vm6B01 75.60 Dihydrodipicolinate reductase [EC:1.3.1.26]Thermotoga maritimaDihydrodipicolinate reductaseLysine biosynthesisMetabolic pathways 3.40.50.720 135 8 60 2.59 4.28
1q0qA01 75.27 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 3.40.50.720 150 8 68 3.06 4.48
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bgvA01
EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA
SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVV
APSKAVN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bgvA01
EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRA
SGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVV
APSKAVN
BLAST against CATH

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Domain History Events (2)

Domain assigned by lewis on 09 Aug 2006 17:12

Automatically fixing a bunch of choppings that have domains with misordered segments. Here the domain is being reassigned back to its original superfamily. This work is done under ticket:98.

Insertion by lewis on 09 Aug 2006 17:11

Automatically fixing a bunch of choppings that have domains with misordered segments. Here the chopping is being reinserted but with the segments reordered in the domains. The domains should not be reordered. This work is done under ticket:98.