CATH Domain: 1bf5A01 XML data for domain: 1bf5A01

Molscript image for 1bf5A01
1bf5A01
PDB coordinates for domain 1bf5A01

PDB 1bf5, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.1050 Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
1.20.1050.20 Gene3D
1.20.1050.20.1
1.20.1050.20.1.2
1.20.1050.20.1.2.1
1.20.1050.20.1.2.1.1
1.20.1050.20.1.2.1.1.1

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Segment boundaries for domain 1bf5A01

Chopping figure for domain 1bf5A01
DomainStart PDB ResidueStop PDB Residue
1bf5A01 136 317
1bf5A02 318 460
1bf5A03 461 581
1bf5A04 582 710

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 1.20.1050.20.1.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hf8A02 75.96 Rattus norvegicusPostsynaptic membranePresynaptic membranePlasma membraneClathrin binding 1.20.58.150 122 9 68 3.19 4.65
1nt2B02 74.25 Archaeoglobus fulgidusProtein bindingPutative uncharacterized protein 1.10.287.660 67 13 38 1.35 3.53
1lrzA03 72.60 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 1.20.58.90 62 4 35 1.43 4.04
1nkdA00 71.07 Regulatory protein ropEscherichia coli 1.10.287.230 59 10 33 1.48 4.39
1jm0A00 68.41 1.20.5.420 48 10 27 1.08 3.94
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bf5A01
LDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQN
ALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPITKNKQVLWDRTFSLF
QQLIQSSF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bf5A01
LDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVH
KIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDPIT
KNKQVLWDRTFSLFQQLIQSSF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"