CATH Domain: 1bf2A03 XML data for domain: 1bf2A03

Molscript image for 1bf2A03
1bf2A03
PDB coordinates for domain 1bf2A03

PDB 1bf2, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.1180 Golgi alpha-mannosidase II Gene3D
2.60.40.1180.21
2.60.40.1180.21.1
2.60.40.1180.21.1.1
2.60.40.1180.21.1.1.1
2.60.40.1180.21.1.1.1.1

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Segment boundaries for domain 1bf2A03

Chopping figure for domain 1bf2A03
DomainStart PDB ResidueStop PDB Residue
1bf2A01 1 162
1bf2A02 163 636
1bf2A03 637 750

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.21.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1uokA03 78.96 Bacillus cereusOligo-1,6-glucosidase 2.60.40.1180 78 12 68 3.01 4.40
1ua7A02 77.53 Starch and sucrose metabolismBacillus subtilisAlpha-amylaseAlpha-amylase [EC:3.2.1.1]Metabolic pathways 2.60.40.1180 78 16 68 3.25 4.75
1ea9C04 77.45 Bacillus sp.Cyclomaltodextrinase 2.60.40.1180 81 17 69 2.52 3.64
1iv8A05 77.13 Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme 2.60.40.1180 66 10 57 2.64 4.63
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bf2A03
WYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWND
GASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bf2A03
WYSGSQLTWYQPSGAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVTDTCDWND
GASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bf2003" to "1bf2A03" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:44

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:44

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"