CATH Domain: 1bdsA00 XML data for domain: 1bdsA00

Molscript image for 1bdsA00
1bdsA00
PDB coordinates for domain 1bdsA00

PDB 1bds, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.20 Single Sheet
2.20.20 Anthopleurin-A
2.20.20.10 Anthopleurin-A Gene3D
2.20.20.10.1
2.20.20.10.1.1
2.20.20.10.1.1.1
2.20.20.10.1.1.1.1
2.20.20.10.1.1.1.1.1

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Segment boundaries for domain 1bdsA00

Chopping figure for domain 1bdsA00
DomainStart PDB ResidueStop PDB Residue
1bdsA00 1 43

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.20.20.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wqkA00 85.42 Toxin APETx1Anthopleura elegantissima 2.20.20.10 42 38 95 2.10 2.20
1atxA00 79.33 Neurotoxin-1Anemonia sulcata 2.20.20.10 46 25 80 3.11 3.87
1fd3A00 77.68 Homo sapiensBeta-defensin 2Immune responseG-protein coupled receptor protein signaling pathwayChemotaxis 3.10.360.10 41 9 81 3.83 4.71
1sh1A00 76.55 Neurotoxin 1Stichodactyla helianthus 2.20.20.10 48 23 83 3.62 4.34
1g8aA01 76.26 Pyrococcus horikoshiiFibrillarin-like rRNA/tRNA 2'-O-methyltransferaseFibrillarin-like pre-rRNA processing protein 3.30.200.20 51 6 76 3.57 4.67
1k8bA00 71.44 Methanocaldococcus jannaschiiTranslation initiation factor 2 subunit betaTranslation initiation factor eIF-2 beta subunit 3.30.30.50 52 2 71 3.01 4.23
1h5oA00 69.50 CrotamineCrotalus durissus terrificus 2.20.20.10 42 16 83 4.02 4.80
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bdsA00
AAPCFCSGKPGRGDLWILRGTCPGGYGYTSNCYKWPNICCYPH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bdsA00
AAPCFCSGKPGRGDLWILRGTCPGGYGYTSNCYKWPNICCYPH
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bds000" to "1bdsA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:23

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:46

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"