CATH Domain: 1bdoA00 XML data for domain: 1bdoA00

Molscript image for 1bdoA00
1bdoA00
PDB coordinates for domain 1bdoA00

PDB 1bdo, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.6
2.40.50.100.6.1
2.40.50.100.6.1.1
2.40.50.100.6.1.1.1
2.40.50.100.6.1.1.1.1

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Segment boundaries for domain 1bdoA00

Chopping figure for domain 1bdoA00
DomainStart PDB ResidueStop PDB Residue
1bdoA00 77 156

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.40.50.100.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1iyuA00 88.43 Azotobacter vinelandiiDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2.40.50.100 79 20 87 1.56 1.78
1ghjA00 87.70 Azotobacter vinelandiiDihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2.40.50.100 79 17 87 1.77 2.02
2qf7A07 86.51 Pyruvate carboxylase subunit A [EC:6.4.1.1]Citrate cycle (TCA cycle)Rhizobium etli CFN 42Pyruvate carboxylase subunit B [EC:6.4.1.1]Pyruvate metabolism 2.40.50.100 72 29 82 2.73 3.31
1labA00 81.99 Geobacillus stearothermophilusDihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex 2.40.50.100 80 22 87 2.60 2.97
1e2wA02 81.96 PhotosynthesisChlamydomonas reinhardtiiApocytochrome fApocytochrome fMetabolic pathways 2.40.50.100 60 20 73 3.53 4.79
1hczA02 81.57 Brassica rapa subsp. rapaApocytochrome f 2.40.50.100 59 13 71 3.31 4.65
2a6hC05 81.34 Pyrimidine metabolismThermus thermophilus HB8Purine metabolismDNA-directed RNA polymerase subunit betaDNA-directed RNA polymerase subunit beta [EC:2.7.7.6] 2.40.50.100 75 9 73 2.69 3.65
3klrA00 76.90 Glycine cleavage system H protein, mitochondrialBos taurus 2.40.50.100 124 18 57 2.81 4.91
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bdoA00
EISGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bdoA00
EISGHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bdo000" to "1bdoA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:50

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"