CATH Domain: 1bd0A01 XML data for domain: 1bd0A01

Molscript image for 1bd0A01
1bd0A01
PDB coordinates for domain 1bd0A01

PDB 1bd0, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.10 Alanine racemase Gene3D
3.20.20.10.3
3.20.20.10.3.1
3.20.20.10.3.1.1
3.20.20.10.3.1.1.1
3.20.20.10.3.1.1.1.1

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Segment boundaries for domain 1bd0A01

Chopping figure for domain 1bd0A01
DomainStart PDB ResidueStop PDB Residue
1bd0A01 14 224
1bd0A02 2 13
1bd0A02 244 382

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 3.20.20.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1xfcB02 90.34 Alanine racemaseMycobacterium tuberculosis 3.20.20.10 216 36 96 1.73 1.79
3co8A02 90.15 D-Alanine metabolismAlanine racemaseOenococcus oeni PSU-1Alanine racemase [EC:5.1.1.1]Metabolic pathways 3.20.20.10 208 31 92 1.56 1.69
1ct5A00 82.52 UPF0001 protein YBL036CIdentical protein bindingPyridoxal phosphate bindingSaccharomyces cerevisiae 3.20.20.10 225 11 85 2.83 3.30
1w8gA00 81.23 UPF0001 protein yggSEscherichia coli K-12 3.20.20.10 226 14 87 2.81 3.22
2nvaC02 79.68 Paramecium bursaria Chlorella virus 1A207R protein 3.20.20.10 229 11 86 3.14 3.63
2p3eA02 79.21 Diaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseMetabolic pathwaysLysine biosynthesisAquifex aeolicus 3.20.20.10 223 13 88 3.37 3.80
2o0tA02 78.06 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseMycobacterium tuberculosis 3.20.20.10 260 14 78 3.05 3.89
1knwA02 77.84 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseProtein binding 3.20.20.10 244 11 79 3.04 3.82
1tqjC00 76.29 Ribulose-phosphate 3-epimerasePentose phosphate pathwayPentose and glucuronate interconversionsCarbon fixation in photosynthetic organismsRibulose-phosphate 3-epimerase [EC:5.1.3.1] 3.20.20.70 218 8 78 3.49 4.42
3f4wA00 76.21 Pentose and glucuronate interconversionsMethane metabolismPutative hexulose 6 phosphate synthaseSalmonella enterica subsp. enterica serovar Typhimurium3-hexulose-6-phosphate synthase [EC:4.1.2.43] 3.20.20.70 211 9 80 3.77 4.68
2fliC00 75.74 Pentose phosphate pathwayPentose and glucuronate interconversionsMetabolic pathwaysRibulose-phosphate 3-epimerase [EC:5.1.3.1]Streptococcus pyogenes serotype M1 3.20.20.70 219 6 79 3.84 4.81
1q6oB00 75.17 Ascorbate and aldarate metabolism3-keto-L-gulonate-6-phosphate decarboxylase ulaDMagnesium ion binding3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]3-dehydro-L-gulonate-6-phosphate decarboxylase activity 3.20.20.70 215 7 79 3.45 4.34
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bd0A01
LDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVLGASRPADA
ALAAQQRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEV
NTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bd0A01
LDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVLGASRPADA
ALAAQQRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDEEETKRIVALIERHPHFVLEGLYTHFATADEV
NTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAM
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"