CATH Domain: 1bbgA00 XML data for domain: 1bbgA00

Molscript image for 1bbgA00
1bbgA00
PDB coordinates for domain 1bbgA00

PDB 1bbg, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.80 Gene3D
3.30.160.80.1
3.30.160.80.1.1
3.30.160.80.1.1.1
3.30.160.80.1.1.1.1
3.30.160.80.1.1.1.1.1

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Segment boundaries for domain 1bbgA00

Chopping figure for domain 1bbgA00
DomainStart PDB ResidueStop PDB Residue
1bbgA00 1 40

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.30.160.80.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bidA01 80.17 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 17 76 2.47 3.25
1pjqA02 75.79 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.30.160.110 35 5 62 2.15 3.44
3cngA01 75.37 NUDIX hydrolaseNitrosomonas europaea 2.20.70.10 34 11 70 2.99 4.27
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1bbgA00
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1bbgA00
DDGLCYEGTNCGKVGKYCCSPIGKYCVCYDSKAICNKNCT
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1bbg000" to "1bbgA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"