CATH Domain: 1b9mB02 XML data for domain: 1b9mB02

Molscript image for 1b9mB02
1b9mB02
PDB coordinates for domain 1b9mB02

PDB 1b9m, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.4
2.40.50.100.4.1
2.40.50.100.4.1.1
2.40.50.100.4.1.1.1
2.40.50.100.4.1.1.1.1

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Segment boundaries for domain 1b9mB02

Chopping figure for domain 1b9mB02
DomainStart PDB ResidueStop PDB Residue
1b9mB01 -1 107
1b9mB02 108 181
1b9mB02 253 257
1b9mB03 182 252

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 2.40.50.100.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2awnB02 81.91 ABC transportersMaltooligosaccharide-importing ATPase activityMaltose/maltodextrin import ATP-binding protein MalKMaltose transportMaltose/maltodextrin transport system ATP-binding protein [EC:3.6.3.19] 2.40.50.100 66 10 65 1.83 2.80
1uebA02 80.87 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 63 6 70 3.40 4.80
1bkbA02 80.58 Pyrobaculum aerophilumTranslation initiation factor 5A 2.40.50.140 62 12 70 3.48 4.91
3d31A02 80.32 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 15 55 2.19 3.94
3tssA02 79.77 Toxic shock syndrome toxin-1Staphylococcus aureus 2.40.50.110 71 5 66 2.41 3.62
2r7dA03 79.32 Exoribonuclease II [EC:3.1.13.1]Ribonuclease II family proteinDeinococcus radiodurans 2.40.50.140 59 8 61 2.89 4.73
1ty0A02 78.78 Streptococcus pyogenesExotoxin J 2.40.50.110 75 4 68 2.97 4.37
1hh2P02 78.72 N utilization substance protein AThermotoga maritima 2.40.50.140 63 7 68 3.27 4.80
1cukA01 78.30 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 10 69 2.96 4.26
1oxxK02 77.98 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 13 52 1.27 2.41
1eu3A02 77.86 Mitogenic exotoxin Z 2Streptococcus pyogenes 2.40.50.110 80 5 63 2.93 4.60
2zteA01 77.73 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 15 70 3.46 4.88
2qgqA02 77.28 Thermotoga maritimaRibosomal protein S12 methylthiotransferase rimO 2.40.50.140 59 8 61 2.49 4.07
1g29102 77.24 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 15 52 1.59 3.01
1y14D02 76.81 Pyrimidine metabolismNuclear-transcribed mRNA catabolic process, exonucleolyticCytoplasmic mRNA processing bodyPurine metabolismPositive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.40.50.140 87 5 56 2.78 4.94
3irbA02 76.22 Sulfolobus solfataricusPutative uncharacterized protein 2.40.50.140 66 6 59 2.95 4.94
1a62A02 76.01 RNA degradationTranscriptional attenuationTranscription termination factor RhoProtein bindingEscherichia coli K-12 2.40.50.140 70 11 69 3.16 4.55
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Displaying entries 1 to 17 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1b9mB02
ALPLNSLLAAISRFSLQTSARNQWFGTITAQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILADSVI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1b9mB02
ALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILADSVI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"