CATH Domain: 1b9mA03 XML data for domain: 1b9mA03

Molscript image for 1b9mA03
1b9mA03
PDB coordinates for domain 1b9mA03

PDB 1b9m, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.50 OB fold (Dihydrolipoamide Acetyltransferase, E2P)
2.40.50.100 Gene3D
2.40.50.100.5
2.40.50.100.5.1
2.40.50.100.5.1.1
2.40.50.100.5.1.1.1
2.40.50.100.5.1.1.1.1

[top]
Segment boundaries for domain 1b9mA03

Chopping figure for domain 1b9mA03
DomainStart PDB ResidueStop PDB Residue
1b9mA01 -1 106
1b9mA02 107 181
1b9mA02 253 258
1b9mA03 182 252

Structural Neighbourhood (27 entries)

There are 27 matching structural neighberhood comparisons for CATH ID 2.40.50.100.5.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 27 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3d31A03 89.39 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.100 71 12 94 2.01 2.13
1g29102 82.63 Maltose transport protein MalKThermococcus litoralis 2.40.50.140 45 13 64 1.56 2.43
1e2wA02 82.41 PhotosynthesisChlamydomonas reinhardtiiApocytochrome fApocytochrome fMetabolic pathways 2.40.50.100 60 18 75 3.40 4.49
1cukA01 81.66 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAEscherichia coli K-12 2.40.50.140 66 16 70 2.38 3.40
1hczA02 81.26 Brassica rapa subsp. rapaApocytochrome f 2.40.50.100 59 15 75 3.25 4.29
2zteA01 80.93 Homologous recombinationHolliday junction ATP-dependent DNA helicase ruvAHolliday junction DNA helicase RuvAMycobacterium tuberculosis 2.40.50.140 65 9 72 3.21 4.41
1ty0A02 80.81 Streptococcus pyogenesExotoxin J 2.40.50.110 75 7 65 2.30 3.52
1eu3A02 80.29 Mitogenic exotoxin Z 2Streptococcus pyogenes 2.40.50.110 80 5 61 2.48 4.05
3d31A02 80.25 Methanosarcina acetivoransPutative sulfate transport system ATP-binding proteinSulfate/molybdate ABC transporter, ATP-binding proteinABC transporters 2.40.50.140 46 17 58 2.04 3.48
1oxxK02 79.65 ABC transporter, ATP binding protein (Glucose)Glucose/arabinose transport system ATP-binding proteinSulfolobus solfataricusABC transporters 2.40.50.140 45 13 61 1.98 3.22
3i4oA00 79.56 Translation initiation factor IF-1Translation initiation factor IF-1Mycobacterium tuberculosis 2.40.50.140 68 7 71 3.45 4.83
1x6oA02 79.42 Translation initiation factor eIF-5AEukaryotic initiation factor 5a, putativeLeishmania braziliensis 2.40.50.140 79 8 65 2.29 3.48
2awnB02 79.08 ABC transportersMaltooligosaccharide-importing ATPase activityMaltose/maltodextrin import ATP-binding protein MalKMaltose transportMaltose/maltodextrin transport system ATP-binding protein [EC:3.6.3.19] 2.40.50.100 66 19 68 2.66 3.88
3d0fA01 78.64 MrcA; penicillin-binding 1 (Peptidoglycan synthetase) transmembrane proteinPenicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-]Peptidoglycan biosynthesisNitrosomonas europaeaMetabolic pathways 2.40.50.140 67 11 65 2.54 3.87
1dgsA04 78.25 DNA ligaseThermus filiformis 2.40.50.140 73 4 68 2.96 4.32
1c9oA00 77.47 Bacillus caldolyticusCold shock protein cspBCold shock protein (beta-ribbon, CspA family) 2.40.50.140 66 9 68 3.04 4.43
2jqoA01 76.61 Bacillus subtilisUncharacterized protein yobA 2.40.50.140 88 7 54 2.01 3.69
3irbA02 75.96 Sulfolobus solfataricusPutative uncharacterized protein 2.40.50.140 66 6 67 2.98 4.44
2z8lA02 75.92 Exotoxin 3Staphylococcus aureus 2.40.50.110 74 4 71 3.38 4.72
3tssA02 75.61 Toxic shock syndrome toxin-1Staphylococcus aureus 2.40.50.110 71 4 64 3.05 4.71
1rl2A01 75.51 Geobacillus stearothermophilus50S ribosomal protein L2 2.40.50.140 55 14 71 3.43 4.80
1uebA03 75.46 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 58 3 61 2.51 4.09
1y14D02 75.07 Pyrimidine metabolismNuclear-transcribed mRNA catabolic process, exonucleolyticCytoplasmic mRNA processing bodyPurine metabolismPositive regulation of nuclear-transcribed mRNA poly(A) tail shortening 2.40.50.140 87 4 54 2.34 4.33
1uebA02 74.12 Thermus thermophilus HB8Elongation factor EF-PElongation factor P 2.40.50.140 63 7 70 3.06 4.37
2r7dA03 74.06 Exoribonuclease II [EC:3.1.13.1]Ribonuclease II family proteinDeinococcus radiodurans 2.40.50.140 59 10 62 2.76 4.39
2p5zX04 74.02 Escherichia coli O6Putative uncharacterized protein 2.40.50.230 65 12 58 2.78 4.75
1fjgQ00 72.74 Thermus thermophilus HB830S ribosomal protein S17Small subunit ribosomal protein S17Ribosome 2.40.50.140 104 10 45 2.12 4.69
[1]
Displaying entries 1 to 27 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1b9mA03
LKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLALPDGQTLCATVPVNEATSLQQGQNVTAYFN
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1b9mA03
LKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLXALPDGQTLCATVPVNEATSLQQGQNVTAYFN
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"