CATH Domain: 1b67A00 XML data for domain: 1b67A00

Molscript image for 1b67A00
1b67A00
PDB coordinates for domain 1b67A00

PDB 1b67, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.20 Histone, subunit A
1.10.20.10 Histone, subunit A Gene3D
1.10.20.10.9
1.10.20.10.9.1
1.10.20.10.9.1.1
1.10.20.10.9.1.1.1
1.10.20.10.9.1.1.1.1

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Segment boundaries for domain 1b67A00

Chopping figure for domain 1b67A00
DomainStart PDB ResidueStop PDB Residue
1b67A00 2 69

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 1.10.20.10.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tafB00 90.79 Transcription initiation factor TFIID subunit D5Transcription factor TFIID complexTranscription initiation factor TFIID subunit 6Drosophila melanogasterProtein binding 1.10.20.10 69 25 94 1.36 1.44
1tafA00 90.00 Transcription factor TFIID complexSAGA complexTranscription initiation factor TFIID subunit D7Transcription initiation factor TFIID subunit 9Drosophila melanogaster 1.10.20.10 67 22 98 1.92 1.95
1jfiA00 89.76 Sequence-specific DNA binding transcription factor activityTranscription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoterDr1-associated corepressor 1.10.20.10 63 15 91 1.54 1.69
1bh9B00 86.34 Protein N-terminus bindingThyroid hormone receptor bindingTranscription coactivator activityBasal transcription factorsPositive regulation by host of viral transcription 1.10.20.10 89 22 76 1.50 1.96
1bh9A00 84.26 Basal transcription factorsTranscription factor TFIID complexTranscription initiation factor TFIID subunit D11Protein C-terminus bindingTranscription initiation factor TFIID subunit 13 1.10.20.10 45 13 64 1.22 1.89
1eqzH00 83.54 Systemic lupus erythematosusGallus gallusHistone H4Histone H4 1.10.20.10 95 27 71 1.71 2.39
1h3oA00 82.47 General RNA polymerase II transcription factor activityTranscription coactivator activityBasal transcription factorsTranscription factor TFIID complexCytoplasm 1.10.20.10 48 14 64 1.41 2.18
1kx5D00 78.34 Histone H2BXenopus laevisHistone H2B 1.1 1.10.20.10 122 23 55 1.84 3.30
1kx5A00 78.26 Systemic lupus erythematosusHistone H3.2Xenopus laevisHistone H3 1.10.20.10 135 26 50 1.74 3.45
1jfiB00 77.42 Protein Dr1Transcription corepressor activityHomo sapiensNegative regulation of transcription from RNA polymerase II promoter 1.10.20.10 135 29 50 1.54 3.06
1f1eA00 75.61 Methanopyrus kandleriHistone H3/H4 1.10.20.10 147 35 46 1.66 3.59
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1b67A00
GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMFK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1b67A00
GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMFK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:03

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:24

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"