CATH Domain: 1b4fA00 XML data for domain: 1b4fA00

Molscript image for 1b4fA00
1b4fA00
PDB coordinates for domain 1b4fA00

PDB 1b4f, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.150 DNA polymerase; domain 1
1.10.150.50 Transcription Factor, Ets-1 Gene3D
1.10.150.50.3
1.10.150.50.3.1
1.10.150.50.3.1.1
1.10.150.50.3.1.1.1
1.10.150.50.3.1.1.1.1

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Segment boundaries for domain 1b4fA00

Chopping figure for domain 1b4fA00
DomainStart PDB ResidueStop PDB Residue
1b4fA00 6 79

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 1.10.150.50.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3h8mA00 93.74 EphA7 [EC:2.7.10.1]Homo sapiensEphrin type-A receptor 7Axon guidance 1.10.150.50 71 54 94 2.29 2.42
3kkaD00 92.15 Integral to plasma membraneEphrin type-A receptor 2Protein bindingSignal transductionEph receptor A2 [EC:2.7.10.1] 1.10.150.50 68 50 91 2.46 2.68
1x9xA00 86.53 MAPK signaling pathway - yeastSAM domain bindingIdentical protein bindingInvasive growth in response to glucose limitationActivation of MAPKK activity 1.10.150.50 62 22 83 2.27 2.71
1dxsA00 86.50 DNA damage response, signal transduction resulting in induction of apoptosisTranscription factor bindingProtein bindingPositive regulation of transcription, DNA-dependentMismatch repair 1.10.150.50 57 15 77 1.43 1.86
1sv0D00 81.44 ETS-domain lackingNegative regulation of transcriptionRegulation of epidermal growth factor receptor signaling pathwayRegulation of Ras protein signal transductionDrosophila melanogaster 1.10.150.50 81 16 77 2.92 3.75
1t9hA03 75.16 Ribosome biogenesis GTPase [EC:3.6.1.-]Putative ribosome biogenesis GTPase RsgABacillus subtilis 1.10.40.50 68 7 83 4.03 4.81
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1b4fA00
PDYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQIQS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1b4fA00
MEKTRPDYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQMNQIQSV
EV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:04

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:25

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"