CATH Domain: 1b34B00 XML data for domain: 1b34B00

Molscript image for 1b34B00
1b34B00
PDB coordinates for domain 1b34B00

PDB 1b34, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.10
2.30.30.100.10.1
2.30.30.100.10.1.1
2.30.30.100.10.1.1.1
2.30.30.100.10.1.1.1.1

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Segment boundaries for domain 1b34B00

Chopping figure for domain 1b34B00
DomainStart PDB ResidueStop PDB Residue
1b34B00 26 118

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.30.30.100.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n9rB00 89.01 Protein bindingNuclear mRNA splicing, via spliceosomeSmall nuclear ribonucleoprotein FSmall nuclear ribonucleoprotein FU5 snRNP 2.30.30.100 69 18 85 1.57 1.84
3bw1A00 86.68 U6 snRNA-associated Sm-like protein LSm3Small nucleolar ribonucleoprotein complexRNA degradationNucleolusRNA binding 2.30.30.100 86 31 82 4.00 4.85
1b34A00 86.48 SpliceosomeSystemic lupus erythematosusSmall nuclear ribonucleoprotein Sm D1RNA bindingProtein binding 2.30.30.100 80 16 88 3.82 4.30
1ib8A02 82.10 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 10 85 2.70 3.17
2k57A00 79.79 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 7 71 3.17 4.43
1nvpD02 79.26 Basal transcription factorsTranscription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein homodimerization activityTranscription coactivator activity 2.30.18.10 46 13 52 1.98 3.76
1biaA03 78.71 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 14 63 2.68 4.22
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1b34B00
TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMDRYISKMFLRGDSVIVVLRNPLIAGK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1b34B00
TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS
VIVVLRNPLIAGK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"