CATH Domain: 1b34A00 XML data for domain: 1b34A00

Molscript image for 1b34A00
1b34A00
PDB coordinates for domain 1b34A00

PDB 1b34, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.30 SH3 type barrels.
2.30.30.100 Gene3D
2.30.30.100.14
2.30.30.100.14.1
2.30.30.100.14.1.1
2.30.30.100.14.1.1.1
2.30.30.100.14.1.1.1.1

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Segment boundaries for domain 1b34A00

Chopping figure for domain 1b34A00
DomainStart PDB ResidueStop PDB Residue
1b34A00 2 81

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.30.30.100.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ib8A02 81.30 Hypothetical proteinRibosome maturation factor rimPStreptococcus pneumoniae 2.30.30.180 67 10 78 2.65 3.37
1nh2D02 79.09 Transcription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein bindingBasal transcription factorsTranscription initiation factor IIA small subunit 2.30.18.10 48 14 56 2.37 4.21
1nvpD02 78.66 Basal transcription factorsTranscription factor TFIIA complexGeneral RNA polymerase II transcription factor activityProtein homodimerization activityTranscription coactivator activity 2.30.18.10 46 13 53 1.91 3.55
2k57A00 78.33 Pseudomonas syringae pv. phaseolicola 1448ALipoprotein, putative 2.30.30.100 55 14 66 3.03 4.57
1biaA03 77.36 Biotin metabolismDNA bindingBirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]Bifunctional protein birABiotin-[acetyl-CoA-carboxylase] ligase activity 2.30.30.100 47 12 58 2.55 4.34
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1b34A00
KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1b34A00
MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL
V
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:25

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:48

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"