CATH Domain: 1b04A03 XML data for domain: 1b04A03

Molscript image for 1b04A03
1b04A03
PDB coordinates for domain 1b04A03

PDB 1b04, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.610 Helix hairpin bin Gene3D
1.10.287.610.2
1.10.287.610.2.1
1.10.287.610.2.1.1
1.10.287.610.2.1.1.1
1.10.287.610.2.1.1.1.1

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Segment boundaries for domain 1b04A03

Chopping figure for domain 1b04A03
DomainStart PDB ResidueStop PDB Residue
1b04A01 118 247
1b04A02 83 116
1b04A02 248 312
1b04A03 2 63

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.10.287.610.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wb7A01 83.54 Superoxide dismutase, Fe-Mn family [EC:1.15.1.1]Sulfolobus solfataricusSuperoxide dismutase [Fe] 1.10.287.990 67 1 80 3.79 4.70
1sf9A01 83.52 Bacillus subtilisUncharacterized protein yfhH 1.10.287.880 64 8 65 1.84 2.80
1skvA00 83.42 Protein D-63Sulfolobus virus 1 1.10.287.660 62 14 72 2.14 2.95
1bsmA01 83.22 Superoxide dismutase [Mn/Fe]Propionibacterium freudenreichii subsp. shermanii 1.10.287.990 64 1 84 3.83 4.54
1lrzA03 83.15 Peptidoglycan biosynthesisMetabolic pathwaysPeptidoglycan pentaglycine glycine transferase (the second and third glycine) [EC:2.3.2.-]Aminoacyltransferase femAStaphylococcus aureus 1.20.58.90 62 9 77 3.37 4.35
2nr4A02 82.60 Hypothetical proteinMethanosarcina mazeiConserved protein 1.20.58.290 58 5 82 2.88 3.50
2oyqA04 82.06 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 4 79 3.88 4.91
2p5oA04 81.09 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 55 3 75 3.37 4.45
2arhA02 78.32 Aquifex aeolicusPutative uncharacterized protein 1.10.287.870 40 10 58 2.28 3.93
1lvfB00 78.12 Rattus norvegicusSyntaxin-6Syntaxin 6SNARE interactions in vesicular transport 1.20.58.90 104 4 57 2.41 4.18
1hs7A00 74.71 SNAP receptor activitySyntaxin 7Vesicle fusionSyntaxin VAM3Golgi to vacuole transport 1.20.58.70 97 9 60 2.99 4.92
2e2aA00 74.41 Lactococcus lactis subsp. lactisLactose-specific phosphotransferase enzyme IIA component 1.20.58.80 104 4 59 2.88 4.83
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1b04A03
DRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1b04A03
MDRQQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQR
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Flow stage update by sillitoe on 06 Mar 2006 15:33

HomCheck 'Assigned T' domains

Insertion by auto on 05 Mar 2006 16:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"