CATH Domain: 1awcB00 XML data for domain: 1awcB00

Molscript image for 1awcB00
1awcB00
PDB coordinates for domain 1awcB00

PDB 1awc, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.40 Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
1.25.40.20 Gene3D
1.25.40.20.6
1.25.40.20.6.1
1.25.40.20.6.1.1
1.25.40.20.6.1.1.1
1.25.40.20.6.1.1.1.1

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Segment boundaries for domain 1awcB00

Chopping figure for domain 1awcB00
DomainStart PDB ResidueStop PDB Residue
1awcB00 5 157

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 1.25.40.20.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ympA00 90.20 Negative regulation of gene-specific transcriptionNeural tube developmentNeurogenic locus notch homolog protein 1Regulation of somitogenesisRegulation of epithelial cell proliferation involved in prostate gland development 1.25.40.20 131 22 85 1.66 1.94
3c5rA00 88.96 BRCA1-associated RING domain protein 1Protein homodimerization activityRNA bindingBRCA1-A complexNegative regulation of apoptosis 1.25.40.20 125 28 77 2.11 2.71
1ycsB01 87.36 Induction of apoptosisNF-kappaB bindingNegative regulation of cell cycleHomo sapiensApoptosis-stimulating of p53 protein 2 1.25.40.20 128 24 78 1.74 2.22
3ehrA02 86.64 Osteoclast-stimulating factor 1OssificationIdentical protein bindingHomo sapiensSignal transduction 1.25.40.20 114 28 73 1.38 1.89
1bi7B00 86.32 Bladder cancerSenescencePathways in cancerNon-small cell lung cancerProtein binding 1.25.40.20 125 24 79 2.25 2.85
1uohA00 85.72 26S proteasome non-ATPase regulatory subunit 10CytoplasmProteasome regulatory particleActin cytoskeletonHomo sapiens 1.25.40.20 223 30 68 2.08 3.03
1n0qB00 85.37 1.25.40.20 93 41 57 0.98 1.70
1s70B01 84.73 Focal adhesionGallus gallusProtein phosphatase 1 regulatory subunit 12ARegulation of actin cytoskeletonProtein phosphatase 1 regulatory subunit 12A 1.25.40.20 162 22 72 3.37 4.63
2dznA00 84.36 26S proteasome non-ATPase regulatory subunit 10Proteasome regulatory particle assemblyProbable 26S proteasome regulatory subunit p28NucleusSaccharomyces cerevisiae 1.25.40.20 226 26 66 1.96 2.93
1k1aA00 83.26 Transcription factor bindingBcl3/NF-kappaB2 complexNegative regulation of apoptosisCytoplasmI-kappaB kinase/NF-kappaB cascade 1.25.40.20 228 26 67 1.96 2.92
1iknD00 82.81 Cytoplasmic sequestering of NF-kappaBNeurotrophin signaling pathwayT cell receptor signaling pathwayApoptosisAdipocytokine signaling pathway 1.25.40.20 215 28 70 2.69 3.80
1wdyA00 79.27 2-5A-dependent ribonucleaseRibonuclease L [EC:3.1.26.-]Homo sapiens 1.25.40.20 285 28 53 2.28 4.25
1n11A00 75.00 Structural constituent of cytoskeletonMaintenance of epithelial cell apical/basal polarityEnzyme bindingHomo sapiensAnkyrin-1 1.25.40.20 404 35 37 1.05 2.77
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1awcB00
DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA
NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1awcB00
DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA
NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:44

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"