CATH Domain: 1avyB00 XML data for domain: 1avyB00

Molscript image for 1avyB00
1avyB00
PDB coordinates for domain 1avyB00

PDB 1avy, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.320 6-Phosphogluconate Dehydrogenase, domain 3 Gene3D
1.20.5.320.3
1.20.5.320.3.1
1.20.5.320.3.1.1
1.20.5.320.3.1.1.1
1.20.5.320.3.1.1.1.1

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Segment boundaries for domain 1avyB00

Chopping figure for domain 1avyB00
DomainStart PDB ResidueStop PDB Residue
1avyB00 432 485

Structural Neighbourhood (29 entries)

There are 29 matching structural neighberhood comparisons for CATH ID 1.20.5.320.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 29 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1avyA00 91.49 Enterobacteria phage T4Fibritin 1.20.5.320 68 100 79 0.44 0.55
1ox3A00 80.99 Enterobacteria phage T4Fibritin 1.20.5.320 108 59 48 0.49 1.02
1r8eA03 80.42 Multidrug-efflux transporter 1 regulatorBacillus subtilis 1.20.5.490 44 9 70 3.21 4.56
1aa0A00 79.73 Enterobacteria phage T4Fibritin 1.20.5.320 113 94 46 0.53 1.15
3effK02 79.27 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 13 79 3.21 4.03
3ii6A02 78.57 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 9 75 3.10 4.09
1ybkA00 78.13 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 3 48 0.94 1.95
1e5wA04 77.72 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 0 50 1.55 3.04
1a2xB00 77.72 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 3 53 1.86 3.46
1m7lA00 77.03 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 1.20.5.360 40 25 66 2.53 3.79
1s5lX00 76.25 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 2 57 2.35 4.09
1vf5B01 76.20 Cytochrome b6-f complex subunit 4Mastigocladus laminosus 4.10.81.10 46 6 62 2.18 3.46
2e74B01 75.71 Cytochrome b6-f complex subunit 4Mastigocladus laminosus 4.10.81.10 58 5 58 1.86 3.17
1hf9A00 75.53 Protein homodimerization activityNegative regulation of hydrolase activityATPase inhibitor activityBos taurusATPase binding 1.20.5.500 41 4 72 3.42 4.74
1wt6B00 75.38 ATP bindingProtein phosphorylationRegulation of heart contractionHomo sapiensProtein serine/threonine kinase activity 1.20.5.340 67 11 40 0.88 2.18
1dipB01 74.32 Sus scrofaTSC22 domain family protein 3 1.20.5.490 45 4 44 1.24 2.79
1h8bB00 74.31 TitinOryctolagus cuniculus 1.20.5.510 23 13 42 1.28 3.01
2p10B02 73.94 Mesorhizobium lotiMll9387 protein 1.20.5.460 26 3 48 2.12 4.40
1go9A00 73.84 1.20.5.480 39 7 50 2.21 4.42
1jocA01 73.49 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 3 48 2.31 4.78
1omiA02 73.43 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 0 35 0.55 1.56
2zjsE00 72.95 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 8 46 0.92 1.99
2o1kA00 72.65 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 4 35 0.63 1.79
1ic2B00 69.52 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 1 31 0.81 2.60
1fs0G02 66.95 Oxidative phosphorylationMetabolic pathwaysATP synthesis coupled proton transportATP synthase gamma chainF-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] 1.10.287.80 89 9 30 1.45 4.78
1cunA01 65.97 Spectrin alpha chain, brainGallus gallusSpectrin alpha 1.20.58.60 102 3 23 0.54 2.29
1d66B02 64.90 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 27 0.50 1.80
1onvB00 63.11 CTD phosphatase activityProtein dephosphorylationHomo sapiensRNA polymerase II subunit A C-terminal domain phosphataseDNA-directed RNA polymerase activity 1.20.5.670 21 14 35 1.55 4.41
1mkmA02 61.55 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 25 0.70 2.70
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Displaying entries 1 to 29 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1avyB00
VRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1avyB00
VRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSPA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"