CATH Domain: 1avyA00 XML data for domain: 1avyA00

Molscript image for 1avyA00
1avyA00
PDB coordinates for domain 1avyA00

PDB 1avy, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.320 6-Phosphogluconate Dehydrogenase, domain 3 Gene3D
1.20.5.320.5
1.20.5.320.5.1
1.20.5.320.5.1.1
1.20.5.320.5.1.1.1
1.20.5.320.5.1.1.1.1

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Segment boundaries for domain 1avyA00

Chopping figure for domain 1avyA00
DomainStart PDB ResidueStop PDB Residue
1avyA00 419 486

Structural Neighbourhood (26 entries)

There are 26 matching structural neighberhood comparisons for CATH ID 1.20.5.320.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 26 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ox3A00 84.03 Enterobacteria phage T4Fibritin 1.20.5.320 108 47 60 0.95 1.58
1aa0A00 83.42 Enterobacteria phage T4Fibritin 1.20.5.320 113 89 57 0.68 1.18
1ybkA00 81.87 TetrabrachionStaphylothermus marinus 1.20.5.1060 52 3 57 1.30 2.27
3e7kA00 81.50 Rattus norvegicusCalcium channel activityCalcium ion transportIntegral to membraneProtein binding 1.20.5.1010 54 7 63 3.05 4.82
1pl5A00 81.15 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 5 54 1.77 3.24
2w83C00 80.75 Homo sapiensIntegral to membraneC-Jun-amino-terminal kinase-interacting protein 4SpermatogenesisPositive regulation of cell migration 1.20.5.1000 67 8 61 2.12 3.43
1nknA00 80.60 NucleusPositive regulation of RNA polymerase II transcriptional preinitiation complex assemblyGeneral control protein GCN4General control protein GCN4Positive regulation of gene-specific transcription from RNA polymerase II promoter 1.20.5.340 74 11 72 3.54 4.85
1ezjA02 80.60 Sendai virus (strain Harris)Phosphoprotein 1.10.287.340 52 9 58 2.55 4.33
2o1kA00 80.20 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 2 50 0.85 1.70
1e5wA04 79.79 Leukocyte migrationReceptor bindingCytoskeletonMembrane to membrane dockingNucleolus 1.20.5.450 55 5 60 2.02 3.35
1uixA00 79.38 Chemokine signaling pathwayRho-associated, coiled-coil containing protein kinase [EC:2.7.11.1]Leukocyte transendothelial migrationWnt signaling pathwayTGF-beta signaling pathway 1.20.5.730 68 5 51 1.61 3.13
1kilE00 79.14 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 7 50 1.84 3.68
1t6aA01 78.70 Geobacillus stearothermophilusRbstp2229 protein 1.20.5.850 43 4 47 2.15 4.57
1jekA00 78.65 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 15 52 1.61 3.04
3effK02 78.07 Streptomyces lividansVoltage-gated potassium channel 1.20.5.440 45 2 63 2.91 4.60
1ic2B00 76.92 Gallus gallusTropomyosin alpha-1 chain 1.20.5.340 77 1 48 1.44 3.00
1xrdA01 75.91 Light-harvesting complex 1 alpha chainRhodospirillum rubrumLight-harvesting protein B-870 alpha chain 1.20.5.890 43 6 57 2.79 4.86
1s5lX00 75.83 Photosystem II reaction center X proteinThermosynechococcus elongatus BP-1 1.20.5.510 40 5 57 2.84 4.95
2zjsE00 75.33 Protein exportBacterial secretion systemThermus thermophilus HB8Preprotein translocase subunit secEPreprotein translocase subunit SecE 1.20.5.1030 46 10 55 2.13 3.81
2hr3A01 74.15 Probable transcriptional regulatorPseudomonas aeruginosa 1.20.5.420 30 10 44 2.18 4.94
1fdoA05 71.74 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 11 39 1.48 3.73
1h8bB00 70.12 TitinOryctolagus cuniculus 1.20.5.510 23 13 33 1.29 3.81
1a2xB00 67.70 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 12 29 0.98 3.33
2qiwA02 65.15 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 5 26 0.68 2.57
1d66B02 60.81 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 22 0.39 1.77
1mkmA02 57.14 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 0 20 0.62 3.01
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Displaying entries 1 to 26 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1avyA00
TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSPA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1avyA00
VEESGLTNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFLSPA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"