CATH Domain: 1avbA00 XML data for domain: 1avbA00

Molscript image for 1avbA00
1avbA00
PDB coordinates for domain 1avbA00

PDB 1avb, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.200 Gene3D
2.60.120.200.20
2.60.120.200.20.1
2.60.120.200.20.1.1
2.60.120.200.20.1.1.1
2.60.120.200.20.1.1.1.1

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Segment boundaries for domain 1avbA00

Chopping figure for domain 1avbA00
DomainStart PDB ResidueStop PDB Residue
1avbA00 1 226

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.60.120.200.20.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2eigA00 90.12 Lotus tetragonolobusLectin 2.60.120.200 230 31 93 1.71 1.83
2ltnA00 87.72 Pisum sativumLectin 2.60.120.200 181 42 74 1.05 1.40
2ac1A02 76.12 Galactose metabolismCell wallBeta-fructofuranosidase [EC:3.2.1.26]Metabolic pathwaysBeta-fructofuranosidase activity 2.60.120.560 192 8 67 3.35 4.98
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1avbA00
SNDASFNVETFNKTNLILQGDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRTIDNLASFSTNFTFRINAKNIEN
SAYGLAFALVPVGSRPKLKGRYLGLFNTTNYDRDAHTVAVVFDTVSNRIEIDVNSIRPIATESCNFGHNNGEKAEVRITY
DSPKNDLRVSLLYPSSEEKCHVSATVPLEKEVEDWVSVGFSATSGSKKETTETHNVLSWSFSSNFI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1avbA00
SNDASFNVETFNKTNLILQGDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRTIDNLASFSTNFTFRINAKNIEN
SAYGLAFALVPVGSRPKLKGRYLGLFNTTNYDRDAHTVAVVFDTVSNRIEIDVNSIRPIATESCNFGHNNGEKAEVRITY
DSPKNDLRVSLLYPSSEEKCHVSATVPLEKEVEDWVSVGFSATSGSKKETTETHNVLSWSFSSNFI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:46

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:06

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"