CATH Domain: 1aukA01 XML data for domain: 1aukA01

Molscript image for 1aukA01
1aukA01
PDB coordinates for domain 1aukA01

PDB 1auk, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.720 Alkaline Phosphatase, subunit A
3.40.720.10 Alkaline Phosphatase, subunit A Gene3D
3.40.720.10.5
3.40.720.10.5.1
3.40.720.10.5.1.1
3.40.720.10.5.1.1.1
3.40.720.10.5.1.1.1.1

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Segment boundaries for domain 1aukA01

Chopping figure for domain 1aukA01
DomainStart PDB ResidueStop PDB Residue
1aukA01 19 370
1aukA01 472 503
1aukA02 371 471

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.720.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1fsuA01 87.05 LysosomeArylsulfatase B [EC:3.1.6.12]Glycosaminoglycan degradationMetabolic pathwaysLysosomal transport 3.40.720.10 370 29 92 3.76 4.07
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1aukA01
RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLTPSRAALLTGRLPVRMGMYPGVLVPSSRGG
LPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPI
PLLANLSVEAQPPWLPGLEARYMAFAHDLMADAQRQDRPFFLYYASHHTHYPQFSGQSFAERSGRGPFGDSLMELDAAVG
TLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGGVREPALAFWPGHIAPGVTHELASSLDLLPT
LAALAGAPLPNVTLDGFDLSPLLLGTGKSPRFGPSQVARGEDPALQICCHPGCTPRPACCHCP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1aukA01
RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLTGRLPVRMGMYPGVLVPSSRG
GLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQGFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVP
IPLLANLSVEAQPPWLPGLEARYMAFAHDLMADAQRQDRPFFLYYASHHTHYPQFSGQSFAERSGRGPFGDSLMELDAAV
GTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGLLRCGKGTTYEGGVREPALAFWPGHIAPGVTHELASSLDLLP
TLAALAGAPLPNVTLDGFDLSPLLLGTGKSPRFGPSQVARGEDPALQICCHPGCTPRPACCHCPDPHA
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1auk001" to "1aukA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:28

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"