CATH Domain: 1atgA01 XML data for domain: 1atgA01

Molscript image for 1atgA01
1atgA01
PDB coordinates for domain 1atgA01

PDB 1atg, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.18
3.40.190.10.18.1
3.40.190.10.18.1.1
3.40.190.10.18.1.1.1
3.40.190.10.18.1.1.1.1

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Segment boundaries for domain 1atgA01

Chopping figure for domain 1atgA01
DomainStart PDB ResidueStop PDB Residue
1atgA01 2 81
1atgA01 191 232
1atgA02 82 190

Structural Neighbourhood (34 entries)

There are 34 matching structural neighberhood comparisons for CATH ID 3.40.190.10.18.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 34 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3gzgA01 93.66 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 28 96 1.08 1.12
1twyA01 87.49 Two-component systemABC transportersVibrio choleraePhosphate transport system substrate-binding proteinABC transporter, periplasmic substrate-binding protein 3.40.190.10 112 16 88 2.45 2.77
1sbpA01 87.31 ABC transportersSalmonella enterica subsp. enterica serovar TyphimuriumSulfate-binding proteinSulfate transport system substrate-binding protein 3.40.190.10 151 16 79 1.87 2.35
3cvgA01 85.52 3.40.190.10 144 12 82 1.84 2.23
1pc3A01 83.49 Two-component systemABC transportersPhosphate-binding protein pstS 1Phosphate transport system substrate-binding proteinMycobacterium tuberculosis 3.40.190.10 141 13 82 2.59 3.12
1i6aA01 82.68 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activatorEscherichia coli K-12Hydrogen peroxide-inducible genes activator 3.40.190.10 108 10 82 2.86 3.45
3fzvD02 82.37 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 109 11 78 2.59 3.29
1o63A01 81.85 Histidine metabolismMetabolic pathwaysThermotoga maritimaATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17] 3.40.190.10 119 10 85 3.71 4.35
2ql3A01 81.84 Rhodococcus jostii RHA1Probable transcriptional regulator, LysR family protein 3.40.190.10 97 10 76 2.47 3.24
1potA01 81.36 ABC transportersOuter membrane-bounded periplasmic spacePolyamine transportPolyamine-transporting ATPase activitySpermidine/putrescine transport system substrate-binding protein 3.40.190.10 166 19 70 2.05 2.91
3c9hA01 81.25 Agrobacterium tumefaciens str. C58ABC transporter, substrate binding protein (Iron)Iron(III) transport system substrate-binding proteinABC transporters 3.40.190.10 189 15 62 1.61 2.58
2qsxA01 81.23 Vibrio parahaemolyticusPutative transcriptional regulator, LysR family 3.40.190.10 94 15 74 3.18 4.26
3fd3A01 80.54 Agrobacterium tumefaciens str. C58LysR family transcriptional regulator, chromosome initiation inhibitorTranscriptional regulator, LysR family 3.40.190.10 104 10 82 3.50 4.23
1xs5A01 80.44 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 9 89 3.49 3.90
1eu8A01 80.41 Pyrococcus furiosusMultiple sugar transport system substrate-binding proteinTrehalose/maltose binding protein 3.40.190.10 190 14 63 1.88 2.95
1anfA01 80.25 Bacterial chemotaxisABC transportersMaltose/maltodextrin transport system substrate-binding proteinMaltose-binding periplasmic proteinDisaccharide binding 3.40.190.10 179 13 66 2.24 3.37
1ixcA02 80.23 LysR-type regulatory proteinCupriavidus necator 3.40.190.10 99 14 76 3.18 4.17
1h3dA01 80.11 Histidine metabolismMetabolic pathwaysHistidine biosynthetic processATP phosphoribosyltransferaseATP phosphoribosyltransferase activity 3.40.190.10 131 5 80 3.83 4.78
1nh8A01 79.73 Histidine metabolismMetabolic pathwaysATP phosphoribosyltransferaseATP phosphoribosyltransferase [EC:2.4.2.17]Mycobacterium tuberculosis 3.40.190.10 109 4 77 3.80 4.93
1uthB01 79.01 LysR-type regulatory proteinBurkholderia sp. DNT 3.40.190.10 127 2 79 3.31 4.16
1eljA01 78.85 Pyrococcus furiosusMaltooligosaccharide transport system substrate-binding proteinABC transportersMaltotriose-binding protein 3.40.190.10 182 13 65 2.12 3.24
2pyyB01 78.35 Nostoc punctiforme PCC 73102Ionotropic glutamate receptor bacterial homologue 3.40.190.10 125 11 88 3.20 3.64
1ursB01 77.94 Maltose binding proteinAlicyclobacillus acidocaldarius subsp. acidocaldarius 3.40.190.10 186 16 65 2.34 3.57
2pvuA01 77.83 Geobacillus stearothermophilusArtJ 3.40.190.10 122 12 86 3.74 4.30
2esnA02 77.61 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 111 6 81 3.29 4.05
3thiA01 77.35 Paenibacillus thiaminolyticusThiaminase-1 3.40.190.10 175 13 66 2.30 3.44
1ii5A01 76.99 Polar amino acid transport system substrate-binding proteinSynechocystis sp. PCC 6803Slr1257 protein 3.40.190.10 128 9 86 3.42 3.94
3cvgC01 76.91 3.40.190.10 81 7 55 1.69 3.03
2o1mA01 76.84 Bacillus subtilisL-cystine-binding protein tcyKPolar amino acid transport system substrate-binding protein 3.40.190.10 108 6 72 3.12 4.33
1lstA01 76.84 ABC transportersLysine-arginine-ornithine-binding periplasmic proteinSalmonella enterica subsp. enterica serovar TyphimuriumLysine/arginine/ornithine transport system substrate-binding protein 3.40.190.10 137 9 83 3.41 4.10
1h44A01 76.53 Serine-type endopeptidase activityLactotransferrinHomo sapiensHeparin bindingHumoral immune response 3.40.190.10 141 7 79 3.79 4.77
1pdaA01 76.30 Metabolic pathwaysPorphyrin and chlorophyll metabolismHydroxymethylbilane synthase activityEscherichia coli K-12Cytoplasm 3.40.190.10 109 5 76 3.21 4.21
1jp4A02 74.87 Rattus norvegicusInositol or phosphatidylinositol phosphatase activitySulfur metabolism3'(2'),5'-bisphosphate nucleotidase 13'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7] 3.40.190.80 129 8 76 3.52 4.59
2ieeA01 74.67 Bacillus subtilisProbable ABC transporter extracellular-binding protein yckBPolar amino acid transport system substrate-binding protein 3.40.190.10 127 12 78 3.82 4.85
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Displaying entries 1 to 34 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1atgA01
ELKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIG
IVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLPQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1atgA01
ELKVVTATNFLGTLEQLAGQFAKQTGHAVVISSGSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIG
IVQQAVITKSTAEKANAEQFMSWMKGPKAVAIIKAAGYVLPQ
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1atg001" to "1atgA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:09

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"