CATH Domain: 1am2A00 XML data for domain: 1am2A00

Molscript image for 1am2A00
1am2A00
PDB coordinates for domain 1am2A00

PDB 1am2, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.170 Beta Complex
2.170.16 Endonuclease - Pi-scei; Chain A, domain 1
2.170.16.10 Endonuclease - Pi-scei; Chain A, domain 1 Gene3D
2.170.16.10.3
2.170.16.10.3.1
2.170.16.10.3.1.1
2.170.16.10.3.1.1.1
2.170.16.10.3.1.1.1.1

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Segment boundaries for domain 1am2A00

Chopping figure for domain 1am2A00
DomainStart PDB ResidueStop PDB Residue
1am2A00 0 198

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 2.170.16.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1mi8A00 85.54 DNA replicationReplicative DNA helicase [EC:3.6.1.-]Replicative DNA helicaseSynechocystis sp. PCC 6803 2.170.16.10 141 26 72 1.61 2.21
1at0A00 82.85 Germ cell attractionHedgehog signaling pathwayMorphogen activityPositive regulation of smoothened signaling pathwayGenital disc anterior/posterior pattern formation 2.170.16.10 142 13 75 2.27 3.02
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1am2A00
ASITGDALVALPEGESVRIADIVPGARPNSDNAIDLKVLDRHGNPVLADRLFHSGEHPVYAVRTVEGLRVTGTANHPLLC
LVDVAGVPTLLWKLIDEIKPGDYAVIQRSAFSTVGVPGLVRFLEAHHRDPDAKAIADELTDGRFYYAKVASVTDAGVQPV
YSLRVDTADHAFITNGFVSHN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1am2A00
ASITGDALVALPEGESVRIADIVPGARPNSDNAIDLKVLDRHGNPVLADRLFHSGEHPVYAVRTVEGLRVTGTANHPLLC
LVDVAGVPTLLWKLIDEIKPGDYAVIQRSAFSVDCAGFARGKPEFAPTTYTVGVPGLVRFLEAHHRDPDAKAIADELTDG
RFYYAKVASVTDAGVQPVYSLRVDTADHAFITNGFVSHN
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1am2000" to "1am2A00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"