CATH Domain: 1alyA00 XML data for domain: 1alyA00

Molscript image for 1alyA00
1alyA00
PDB coordinates for domain 1alyA00

PDB 1aly, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.40 Gene3D
2.60.120.40.5
2.60.120.40.5.1
2.60.120.40.5.1.1
2.60.120.40.5.1.1.1
2.60.120.40.5.1.1.1.1

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Segment boundaries for domain 1alyA00

Chopping figure for domain 1alyA00
DomainStart PDB ResidueStop PDB Residue
1alyA00 116 261

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.60.120.40.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tnrA00 87.38 Lymphotoxin-alphaType I diabetes mellitusSignal transductionLymphotoxin alpha (TNF superfamily, member 1)Induction of apoptosis 2.60.120.40 144 21 93 2.35 2.50
1s55A00 85.92 Mammary gland epithelial cell proliferationOssificationOrgan morphogenesisLymph node developmentProtein homooligomerization 2.60.120.40 156 24 89 2.49 2.79
1rj8A00 84.27 Membrane fractionEctodysplasin-ACytoskeletonSignal transductionEctodysplasin-A 2.60.120.40 140 18 86 2.32 2.67
1o91A00 82.78 Mus musculusCamera-type eye morphogenesisCollagen alpha-1(VIII) chainEpithelial cell proliferationPositive regulation of cell-substrate adhesion 2.60.120.40 131 12 84 2.62 3.08
2q8oA00 82.10 Mus musculusGITR ligand 2.60.120.40 125 19 78 2.53 3.21
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1alyA00
GDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCL
KSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1alyA00
GDQNPQIAAHVISEASSKTTSVLQWAEKGYYTMSNNLVTLENGKQLTVKRQGLYYIYAQVTFCSNREASSQAPFIASLCL
KSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGASVFVNVTDPSQVSHGTGFTSFGLLKL
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1aly000" to "1alyA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"