CATH Domain: 1akoA00 XML data for domain: 1akoA00

Molscript image for 1akoA00
1akoA00
PDB coordinates for domain 1akoA00

PDB 1ako, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.10 Deoxyribonuclease I; Chain A
3.60.10.10 Gene3D
3.60.10.10.2
3.60.10.10.2.1
3.60.10.10.2.1.1
3.60.10.10.2.1.1.1
3.60.10.10.2.1.1.1.1

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Segment boundaries for domain 1akoA00

Chopping figure for domain 1akoA00
DomainStart PDB ResidueStop PDB Residue
1akoA00 1 268

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 3.60.10.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2voaA00 89.65 Base excision repairArchaeoglobus fulgidusExodeoxyribonuclease III (XthA)Exodeoxyribonuclease III [EC:3.1.11.2] 3.60.10.10 256 33 94 1.56 1.65
1hd7A00 87.47 Metal ion bindingUracil DNA N-glycosylase activityDNA-(apurinic or apyrimidinic site) lyaseAP endonuclease 1 [EC:4.2.99.18]Perinuclear region of cytoplasm 3.60.10.10 259 23 88 1.79 2.02
1vybA00 82.48 Homo sapiensPutative uncharacterized protein 3.60.10.10 236 22 83 2.60 3.11
1wduB00 79.21 Bombyx moriORF2 3.60.10.10 219 15 77 2.73 3.50
2a40B00 79.18 Bos taurusDeoxyribonuclease-1 [EC:3.1.21.1]Deoxyribonuclease-1 3.60.10.10 255 12 80 3.18 3.95
2f1nA00 77.87 Escherichia coliCytolethal distending toxin subunit B 3.60.10.10 252 13 76 3.53 4.64
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1akoA00
MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF
PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC
CVETGIDYEIRSMEKPSDHAPVWATFRR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1akoA00
MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF
PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC
CVETGIDYEIRSMEKPSDHAPVWATFRR
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1ako000" to "1akoA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"