CATH Domain: 1agiA00 XML data for domain: 1agiA00

Molscript image for 1agiA00
1agiA00
PDB coordinates for domain 1agiA00

PDB 1agi, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.130 P-30 Protein
3.10.130.10 P-30 Protein Gene3D
3.10.130.10.5
3.10.130.10.5.1
3.10.130.10.5.1.1
3.10.130.10.5.1.1.1
3.10.130.10.5.1.1.1.1

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Segment boundaries for domain 1agiA00

Chopping figure for domain 1agiA00
DomainStart PDB ResidueStop PDB Residue
1agiA00 1 125

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.10.130.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2op2A00 90.02 Bos taurusPancreatic ribonuclease [EC:3.1.27.5]Ribonuclease pancreaticProtein binding 3.10.130.10 124 33 92 2.03 2.21
2p7sA00 86.39 Rana pipiensAmphinase-2 3.10.130.10 107 28 84 3.25 3.87
1yv4A00 86.21 Rana pipiensProtein P-30 3.10.130.10 103 28 82 3.18 3.86
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1agiA00
AQDDYRYIHFLTQHYDAKPKGRNDEYCFNMMKNRRLTRPCKDRNTFIHGNKNDIKAICEDRNGQPYRGDLRISKSEFQIT
ICKHKGGSSRPPCRYGATEDSRVIVVGCENGLPVHFDESFITPRH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1agiA00
AQDDYRYIHFLTQHYDAKPKGRNDEYCFNMMKNRRLTRPCKDRNTFIHGNKNDIKAICEDRNGQPYRGDLRISKSEFQIT
ICKHKGGSSRPPCRYGATEDSRVIVVGCENGLPVHFDESFITPRH
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1agi000" to "1agiA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:52

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:52

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:15

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"