CATH Domain: 1af7A02 XML data for domain: 1af7A02

Molscript image for 1af7A02
1af7A02
PDB coordinates for domain 1af7A02

PDB 1af7, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.48
3.40.50.150.48.1
3.40.50.150.48.1.1
3.40.50.150.48.1.1.1
3.40.50.150.48.1.1.1.1

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Segment boundaries for domain 1af7A02

Chopping figure for domain 1af7A02
DomainStart PDB ResidueStop PDB Residue
1af7A01 11 90
1af7A02 91 284

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.40.50.150.48.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fpoC00 79.64 Ribosomal RNA small subunit methyltransferase D [EC:2.1.1.52]RRNA (guanine-N2-)-methyltransferase activityRRNA base methylationProtein bindingEscherichia coli K-12 3.40.50.150 176 10 74 3.08 4.15
3bxoA01 79.41 Streptomyces venezuelaeN,N-dimethyltransferase 3.40.50.150 177 7 73 3.44 4.67
1i9gA02 78.55 POSSIBLE RNA METHYLTRANSFERASETRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Mycobacterium tuberculosis 3.40.50.150 184 10 74 3.09 4.13
1l3iA00 77.40 Methanothermobacter thermautotrophicus str. Delta HPorphyrin and chlorophyll metabolismProbable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]Precorrin-8W decarboxylase [EC:1.-.-.-]Metabolic pathways 3.40.50.150 178 11 71 3.00 4.19
1nv8A02 77.05 Thermotoga maritimaMethyltransferase [EC:2.1.1.-]HemK protein 3.40.50.150 197 10 75 3.38 4.50
3bzbB00 76.80 Cyanidioschyzon merolae strain 10DUncharacterized protein 3.40.50.150 198 12 73 3.33 4.55
2frnA02 76.68 3.40.50.150 185 8 70 3.20 4.56
1f3lA01 76.54 Rattus norvegicusProtein arginine N-methyltransferase 3 [EC:2.1.1.-]Protein arginine N-methyltransferase 3Peptidyl-arginine methylation, to asymmetrical-dimethyl arginineProtein-arginine omega-N asymmetric methyltransferase activity 3.40.50.150 143 14 60 2.82 4.64
1qamA01 76.40 Bacillus subtilisRRNA (adenine-N6-)-methyltransferase [EC:2.1.1.48]RRNA adenine N-6-methyltransferase 3.40.50.150 157 10 67 3.17 4.69
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Displaying entries 1 to 9 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1af7A02
TNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRL
SELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVP
LLKPDGLLFAGHSENFSNLVREFSLRGQTVYALS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1af7A02
TNLTAFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRL
SELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVP
LLKPDGLLFAGHSENFSNLVREFSLRGQTVYALS
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1af7002" to "1af7A02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:07

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"