CATH Domain: 1ab4A01 XML data for domain: 1ab4A01

Molscript image for 1ab4A01
1ab4A01
PDB coordinates for domain 1ab4A01

PDB 1ab4, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.199 Topoisomerase II; domain 5
3.90.199.10 Topoisomerase II, domain 5 Gene3D
3.90.199.10.3
3.90.199.10.3.1
3.90.199.10.3.1.1
3.90.199.10.3.1.1.1
3.90.199.10.3.1.1.1.1

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Segment boundaries for domain 1ab4A01

Chopping figure for domain 1ab4A01
DomainStart PDB ResidueStop PDB Residue
1ab4A01 30 235
1ab4A01 334 369
1ab4A01 494 522
1ab4A02 236 333
1ab4A03 370 493

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1ab4A01
VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF
GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE
VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI
FESADRLMEVIREELELVREQFGDKRRTEIT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ab4A01
VGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNF
GSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTE
VINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTI
FESADRLMEVIREELELVREQFGDKRRTEIT
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1ab4001" to "1ab4A01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:34

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:07

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"