CATH Domain: 1aa0A00 XML data for domain: 1aa0A00

Molscript image for 1aa0A00
1aa0A00
PDB coordinates for domain 1aa0A00

PDB 1aa0, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.320 6-Phosphogluconate Dehydrogenase, domain 3 Gene3D
1.20.5.320.7
1.20.5.320.7.1
1.20.5.320.7.1.1
1.20.5.320.7.1.1.1
1.20.5.320.7.1.1.1.1

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Segment boundaries for domain 1aa0A00

Chopping figure for domain 1aa0A00
DomainStart PDB ResidueStop PDB Residue
1aa0A00 371 483

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.20.5.320.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1pl5A00 79.06 Chromatin silencing complexLoss of chromatin silencing involved in replicative cell agingChromatin silencingDouble-strand break repair via nonhomologous end joiningDouble-stranded DNA binding 1.20.5.730 75 13 61 1.90 3.11
3ii6A02 76.48 DNA ligation involved in DNA repairProtein C-terminus bindingDNA-dependent protein kinase-DNA ligase 4 complexResponse to X-rayDouble-strand break repair via nonhomologous end joining 1.20.5.370 58 8 51 1.95 3.80
2b9bA04 74.34 Simian virus 5 (strain W3)Fusion glycoprotein F0 1.20.5.1070 62 9 46 1.75 3.80
2zvoB00 73.65 Mus musculusNF-kappa-B essential modulatorActivation of NF-kappaB-inducing kinase activityB cell homeostasis 1.20.5.990 88 1 57 2.82 4.90
1jocA01 72.05 Zinc ion bindingVesicle fusionMembrane fractionSynaptic vesicle to endosome fusionProtein homodimerization activity 1.20.5.390 60 10 41 2.03 4.88
2o1kA00 69.48 Simian rotavirus A/SA11-bothNon-structural glycoprotein 4 1.20.5.430 42 9 37 1.82 4.90
1a2xB00 65.21 Troponin I, fast skeletal muscleTroponin T bindingOryctolagus cuniculus 1.20.5.420 31 16 27 0.96 3.50
1omiA02 63.75 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 7 23 0.96 4.02
2r44A01 62.69 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 23 1.07 4.65
3c8vA04 55.44 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Putative uncharacterized protein 1.20.5.510 19 0 16 0.78 4.64
1d66B02 47.68 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 0 13 0.59 4.44
1mkmA02 47.42 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 7 12 0.61 4.92
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1aa0A00
VSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDV
QALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1aa0A00
VSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDV
QALQEAGYIPEAPRDGQAYVRKDGEWVLLSTFL
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1aa0000" to "1aa0A00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"