CATH Domain: 1a9xA05 XML data for domain: 1a9xA05

Molscript image for 1a9xA05
1a9xA05
PDB coordinates for domain 1a9xA05

PDB 1a9x, Chain A, Domain 5

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.20 Gene3D
3.40.50.20.3
3.40.50.20.3.1
3.40.50.20.3.1.1
3.40.50.20.3.1.1.1
3.40.50.20.3.1.1.1.1

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Segment boundaries for domain 1a9xA05

Chopping figure for domain 1a9xA05
DomainStart PDB ResidueStop PDB Residue
1a9xA01 1 116
1a9xA02 117 140
1a9xA02 211 403
1a9xA03 141 210
1a9xA04 404 553
1a9xA05 554 663
1a9xA06 664 686
1a9xA06 757 936
1a9xA07 687 756
1a9xA08 937 1042

Structural Neighbourhood (47 entries)

There are 47 matching structural neighberhood comparisons for CATH ID 3.40.50.20.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 47 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bxrA05 93.33 3.40.50.20 140 100 78 0.31 0.39
1m1nB03 80.24 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 13 78 2.48 3.17
1dv1B01 79.95 Pyruvate metabolismFatty acid biosynthesisPropanoate metabolismMetabolic pathwaysFatty acid biosynthetic process 3.40.50.20 85 11 68 2.56 3.75
3eq2B01 79.76 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 9 63 2.29 3.60
1iowA01 79.62 D-Alanine metabolismPeptidoglycan biosynthesisD-alanine--D-alanine ligase BD-alanine-D-alanine ligase [EC:6.3.2.4]Escherichia coli K-12 3.40.50.20 84 23 74 2.81 3.77
2aefA01 79.50 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 11 77 2.81 3.63
3eagA01 79.45 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 12 80 3.40 4.25
1vkzA01 79.38 Thermotoga maritimaPhosphoribosylamine--glycine ligase [EC:6.3.4.13]Purine metabolismPhosphoribosylamine--glycine ligaseMetabolic pathways 3.40.50.20 77 12 68 2.42 3.55
2pfsA01 79.30 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 8 84 3.48 4.13
2r85A01 79.20 Pyrococcus furiosus5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-]Purine metabolism5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetaseMetabolic pathways 3.40.50.20 87 14 75 2.56 3.39
2r7kA01 79.14 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase [EC:6.3.4.-]Purine metabolismMethanocaldococcus jannaschii5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetaseMetabolic pathways 3.40.50.20 111 13 84 3.61 4.26
1srrC00 78.77 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 12 61 2.84 4.58
3fdxA00 78.69 Putative uncharacterized protein ynaFKlebsiella pneumoniae subsp. pneumoniae MGH 78578 3.40.50.620 121 8 81 4.04 4.94
1p3dA01 78.61 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 17 76 2.74 3.59
2pn1A01 78.47 Pyrimidine metabolismExiguobacterium sibiricum 255-15Alanine, aspartate and glutamate metabolismCarbamoyl-phosphate synthase large subunit [EC:6.3.5.5]Metabolic pathways 3.40.50.20 119 12 75 2.57 3.40
1ulzA01 78.40 Pyruvate carboxylase subunit A [EC:6.4.1.1]Citrate cycle (TCA cycle)Pyruvate metabolismPyruvate carboxylase n-terminal domainAquifex aeolicus 3.40.50.20 129 12 69 2.75 3.94
3cg0A00 78.00 Desulfovibrio desulfuricans subsp. desulfuricans str. G20Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor 3.40.50.2300 121 10 61 2.97 4.86
1lssA00 77.89 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 12 69 2.60 3.73
2ho3A01 77.88 Oxidoreductase, Gfo/Idh/MocA familyStreptococcus pneumoniae 3.40.50.720 113 15 78 3.25 4.13
1mioB04 77.48 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 11 77 2.96 3.83
1j6uA01 77.14 D-Glutamine and D-glutamate metabolismThermotoga maritimaUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Peptidoglycan biosynthesis 3.40.50.720 85 14 75 3.10 4.11
1iibA00 77.05 Phosphotransferase system (PTS)N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIB componentPTS system, cellobiose-specific IIB component [EC:2.7.1.69]Escherichia coli K-12 3.40.50.270 103 6 61 2.38 3.85
1dz3A00 76.95 Geobacillus stearothermophilusStage 0 sporulation protein A 3.40.50.2300 123 8 60 2.86 4.75
1f2dA02 76.45 Williopsis saturnus1-aminocyclopropane-1-carboxylate deaminase 3.40.50.1100 102 4 71 3.50 4.87
1dnpA01 76.45 Protein-chromophore linkageDeoxyribodipyrimidine photo-lyaseDeoxyribodipyrimidine photo-lyase activityProtein bindingDeoxyribodipyrimidine photo-lyase [EC:4.1.99.3] 3.40.50.620 130 10 71 3.47 4.85
2hmtA00 76.31 Trk system potassium uptake protein TrkABacillus subtilisKtr system potassium uptake protein A 3.40.50.720 139 18 66 2.65 3.96
1dbwB00 76.31 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 8 60 2.97 4.88
1q77A00 76.28 Uncharacterized protein aq_178Aquifex aeolicus 3.40.50.620 137 8 70 2.92 4.17
2b4aA00 76.14 BH3024 proteinBacillus halodurans 3.40.50.2300 116 5 65 2.74 4.18
1xeaA01 76.12 Vibrio choleraeOxidoreductase, Gfo/Idh/MocA familyVirulence factor 3.40.50.720 117 13 71 2.96 4.12
3b2nA00 76.06 Similar to two-component response regulatorStaphylococcus aureus subsp. aureus Mu50 3.40.50.2300 119 7 62 3.10 4.99
3fwzA00 75.85 Inner membrane protein ybaLMonovalent cation:H+ antiporter-2, CPA2 familyEscherichia coli K-12 3.40.50.720 137 8 70 3.44 4.86
1e5dA01 75.77 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.40.50.360 143 7 54 2.63 4.82
1a04A01 75.72 Two-component systemTwo-component system, NarL family, nitrate/nitrite response regulator NarLProtein bindingEscherichia coli K-12Nitrate/nitrite response regulator protein narL 3.40.50.2300 124 5 60 2.65 4.38
1o4wA00 75.57 Archaeoglobus fulgidusPutative uncharacterized protein 3.40.50.1010 123 10 69 3.32 4.75
2dc1A01 75.53 Aspartate dehydrogenase [EC:1.4.1.21]Archaeoglobus fulgidusProbable L-aspartate dehydrogenaseNicotinate and nicotinamide metabolism 3.40.50.720 135 8 57 2.52 4.42
2r25B00 75.31 MAPK signaling pathway - yeastResponse to hydrogen peroxideProtein bindingOsmosensor activityOsomolarity two-component system, sensor histidine kinase SLN1 [EC:2.7.13.3] 3.40.50.2300 131 8 55 2.65 4.76
1id1A00 75.21 Voltage-gated potassium channel activityVoltage-gated potassium channelPotassium ion transportPutative potassium channel proteinEscherichia coli K-12 3.40.50.720 153 9 62 3.00 4.83
1ydwA01 74.86 Arabidopsis thalianaUncharacterized oxidoreductase At4g09670 3.40.50.720 124 7 70 3.30 4.70
2qr3A00 74.67 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 7 63 2.98 4.73
2p2sA01 74.37 Pectobacterium atrosepticumPutative oxidoreductase 3.40.50.720 130 7 67 3.08 4.55
2r6hA02 74.17 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 9 71 3.04 4.23
3c3kB01 73.98 Actinobacillus succinogenes 130ZAlanine racemase 3.40.50.2300 134 10 59 2.87 4.81
3a06B01 73.90 Terpenoid backbone biosynthesisThermotoga maritima1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Metabolic pathways 3.40.50.720 141 11 66 3.15 4.72
2hqbA01 73.52 Transcriptional activator of comK geneTranscriptional activator of comK geneBacillus halodurans 3.40.50.2300 130 3 58 2.42 4.14
3c85A00 73.47 Vibrio parahaemolyticusPutative glutathione-regulated potassium-efflux system protein KefB 3.40.50.720 148 11 64 3.07 4.73
1n2zA01 73.34 ABC transportersPeriplasmic spaceVitamin B12-binding proteinCobalamin bindingVitamin B12 transport system substrate-binding protein 3.40.50.1980 119 12 70 3.43 4.86
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Displaying entries 1 to 47 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a9xA05
NPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIE
KPKGVIVQYGGQTPLKLARALEAAGVPVIG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a9xA05
NPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIE
KPKGVIVQYGGQTPLKLARALEAAGVPVIG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:06

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"