CATH Domain: 1a9xA03 XML data for domain: 1a9xA03

Molscript image for 1a9xA03
1a9xA03
PDB coordinates for domain 1a9xA03

PDB 1a9x, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.1490 Dna Ligase; domain 1
3.30.1490.20 ATP-grasp fold, A domain Gene3D
3.30.1490.20.2
3.30.1490.20.2.1
3.30.1490.20.2.1.1
3.30.1490.20.2.1.1.1
3.30.1490.20.2.1.1.1.1

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Segment boundaries for domain 1a9xA03

Chopping figure for domain 1a9xA03
DomainStart PDB ResidueStop PDB Residue
1a9xA01 1 116
1a9xA02 117 140
1a9xA02 211 403
1a9xA03 141 210
1a9xA04 404 553
1a9xA05 554 663
1a9xA06 664 686
1a9xA06 757 936
1a9xA07 687 756
1a9xA08 937 1042

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 3.30.1490.20.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1bxrA07 93.07 3.30.1490.20 70 24 100 1.19 1.19
1ehiA03 88.97 D-Alanine metabolismD-Ala-D-Ala ligase2Peptidoglycan biosynthesisD-alanine-D-alanine ligase [EC:6.3.2.4]Leuconostoc mesenteroides 3.30.1490.20 68 14 91 1.74 1.90
2yw2A02 88.55 Phosphoribosylamine--glycine ligase [EC:6.3.4.13]Purine metabolismPhosphoribosylamine--glycine ligaseMetabolic pathwaysAquifex aeolicus 3.30.1490.20 70 21 94 2.16 2.29
1iowA03 88.47 D-Alanine metabolismPeptidoglycan biosynthesisD-alanine--D-alanine ligase BD-alanine-D-alanine ligase [EC:6.3.2.4]Escherichia coli K-12 3.30.1490.20 73 20 90 2.28 2.52
1w96A03 88.04 Endoplasmic reticulum membraneAcetyl-CoA carboxylaseProtein import into nucleusBiotin carboxylase [EC:6.3.4.14]Nuclear envelope organization 3.30.1490.20 63 23 90 1.62 1.80
3g8dB03 87.91 Pyruvate metabolismFatty acid biosynthesisPropanoate metabolismMetabolic pathwaysFatty acid biosynthetic process 3.30.1490.20 73 17 90 2.31 2.56
1gsaA03 87.80 Glutathione metabolismMetabolic pathwaysGlutathione synthase [EC:6.3.2.3]Protein bindingCytosol 3.30.1490.20 65 12 91 2.68 2.93
1vkzA02 87.33 Thermotoga maritimaPhosphoribosylamine--glycine ligase [EC:6.3.4.13]Purine metabolismPhosphoribosylamine--glycine ligaseMetabolic pathways 3.30.1490.20 70 24 94 2.16 2.29
1i7nA01 86.01 Rattus norvegicusRegulation of neurotransmitter secretionSynapsin-2Cytoskeletal protein binding 3.30.1490.20 60 15 85 2.23 2.60
2nu8B02 85.63 Citrate cycle (TCA cycle)Propanoate metabolismMetabolic pathwaysC5-Branched dibasic acid metabolismTricarboxylic acid cycle 3.30.1490.20 84 15 78 1.93 2.46
3ethA03 82.95 Purine metabolismMetabolic pathways5-(carboxyamino)imidazole ribonucleotide synthase [EC:6.3.4.18]Phosphoribosylaminoimidazole carboxylase ATPase subunitEscherichia coli K-12 3.30.1490.20 62 20 87 2.26 2.59
2r6fA03 81.46 Nucleotide excision repairGeobacillus kaustophilusExcinuclease ABC subunit AExcinuclease ABC subunit A 3.30.1490.20 70 8 81 2.83 3.48
1ta8A02 78.18 DNA ligase (NAD+) [EC:6.5.1.2]DNA replicationNucleotide excision repairBase excision repairDNA ligase 3.30.1490.70 99 7 65 3.16 4.81
1fviA01 77.93 Paramecium bursaria Chlorella virus 1A544R protein 3.30.1490.70 79 14 74 3.62 4.85
1a0iA01 77.80 Enterobacteria phage T7DNA ligase 3.30.1490.70 83 5 73 3.58 4.87
3l4jA02 76.26 Reciprocal meiotic recombinationDNA topoisomerase 2Regulation of mitotic recombinationDNA topoisomerase II [EC:5.99.1.3]DNA strand elongation involved in DNA replication 3.30.1490.30 47 6 60 2.59 4.32
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a9xA03
LETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a9xA03
LETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 16:06

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"