CATH Domain: 1a9nC00 XML data for domain: 1a9nC00

Molscript image for 1a9nC00
1a9nC00
PDB coordinates for domain 1a9nC00

PDB 1a9n, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.80 Alpha-Beta Horseshoe
3.80.10 Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
3.80.10.10 Ribonuclease Inhibitor Gene3D
3.80.10.10.15
3.80.10.10.15.1
3.80.10.10.15.1.1
3.80.10.10.15.1.1.1
3.80.10.10.15.1.1.1.1

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Segment boundaries for domain 1a9nC00

Chopping figure for domain 1a9nC00
DomainStart PDB ResidueStop PDB Residue
1a9nC00 2 175

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.80.10.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1dceA03 84.88 Rattus norvegicusRab geranylgeranyltransferase activityProtein geranylgeranyltransferase type II [EC:2.5.1.60]Geranylgeranyl transferase type-2 subunit alpha 3.80.10.10 136 23 77 2.37 3.05
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a9nC00
VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGE
GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKM
FKGKRGAQLAKDIA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a9nC00
MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG
EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEK
MFKGKRGAQLAKDIAR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:55

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"