CATH Domain: 1a8kA00 XML data for domain: 1a8kA00

Molscript image for 1a8kA00
1a8kA00
PDB coordinates for domain 1a8kA00

PDB 1a8k, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.4
2.40.70.10.4.1
2.40.70.10.4.1.13
2.40.70.10.4.1.13.1
2.40.70.10.4.1.13.1.14

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Segment boundaries for domain 1a8kA00

Chopping figure for domain 1a8kA00
DomainStart PDB ResidueStop PDB Residue
1a8kA00 1 99

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 2.40.70.10.4.1.13.1.14 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1fmbA00 89.44 Equine infectious anemia virus (clone CL22)Pol polyprotein 2.40.70.10 104 32 94 1.72 1.83
2hahA00 88.71 Pol polyproteinFeline immunodeficiency virus (isolate Petaluma) 2.40.70.10 112 38 86 1.60 1.85
2rspA00 85.86 Rous sarcoma virus - Prague CGag polyprotein 2.40.70.10 115 26 80 1.79 2.24
2pmaA01 79.75 Legionella pneumophila subsp. pneumophila str. Philadelphia 1Putative uncharacterized protein 2.40.70.10 117 13 74 2.89 3.89
1nsoA00 75.57 ProteaseMason-Pfizer monkey virus 2.40.70.10 107 22 88 4.37 4.92
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1a8kA00
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1a8kA00
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:32

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"